Factsheet for VIT_04s0008g04830.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

plastid 3
cytosol 2
plasma membrane 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_09s0018g00900.t01	Wine grape	mitochondrion	18.22	97.89
VIT_09s0002g05380.t01	Wine grape	cytosol	15.6	80.41
VIT_09s0002g05470.t01	Wine grape	cytosol	24.25	69.29
VIT_07s0005g02330.t01	Wine grape	cytosol	12.06	62.59
KRH67877	Soybean	cytosol	45.87	57.0
VIT_09s0002g03550.t01	Wine grape	cytosol, mitochondrion, peroxisome, plasma membrane	48.23	56.79
VIT_09s0002g06930.t01	Wine grape	mitochondrion	19.53	55.81
VIT_09s0002g05390.t01	Wine grape	cytosol, mitochondrion, nucleus	13.63	51.49
VIT_04s0008g04820.t01	Wine grape	plastid	93.18	50.11
VIT_09s0002g03580.t01	Wine grape	plasma membrane	44.56	49.28
VIT_09s0002g05570.t01	Wine grape	plasma membrane	73.26	38.45
VIT_09s0002g05590.t01	Wine grape	plasma membrane	73.26	38.45
VIT_09s0002g05530.t01	Wine grape	plasma membrane, plastid	73.13	38.25
VIT_09s0002g05600.t01	Wine grape	mitochondrion	70.9	37.31
VIT_09s0002g05410.t01	Wine grape	plasma membrane, plastid	70.12	37.23
VIT_09s0002g05360.t01	Wine grape	plasma membrane	71.43	36.6
VIT_07s0005g02350.t01	Wine grape	cytosol, nucleus, peroxisome	11.53	35.77
VIT_09s0002g05450.t01	Wine grape	mitochondrion	10.75	35.04
VIT_09s0002g05400.t01	Wine grape	mitochondrion, plasma membrane	71.56	34.91
VIT_09s0002g05490.t01	Wine grape	mitochondrion	56.75	33.85
VIT_11s0016g04540.t01	Wine grape	cytosol, peroxisome, plasma membrane	58.32	31.32
VIT_11s0016g04590.t01	Wine grape	cytosol	59.24	30.6
VIT_13s0074g00690.t01	Wine grape	cytosol, peroxisome, plasma membrane	55.05	30.48
VIT_13s0074g00700.t01	Wine grape	plastid	59.11	30.47
VIT_13s0074g00660.t01	Wine grape	plastid	58.58	30.37
VIT_04s0008g04230.t01	Wine grape	cytosol, peroxisome, plasma membrane, plastid	56.23	30.19
VIT_06s0061g01480.t01	Wine grape	plastid	57.01	29.79
VIT_07s0005g02240.t01	Wine grape	cytosol, golgi, mitochondrion, nucleus	17.69	28.91
VIT_06s0080g00040.t01	Wine grape	plastid	56.62	28.69
VIT_09s0002g03640.t01	Wine grape	cytosol, mitochondrion, peroxisome, plasma membrane	56.09	28.67
VIT_05s0020g00680.t01	Wine grape	plastid	51.25	27.21
VIT_09s0002g03630.t01	Wine grape	plasma membrane	49.15	26.6
TraesCS4A01G372100.1	Wheat	cytosol, peroxisome, plasma membrane	48.49	25.89
VIT_06s0061g01470.t01	Wine grape	mitochondrion	35.12	23.89
VIT_14s0030g00590.t01	Wine grape	cytosol	1.57	7.27
VIT_04s0043g00970.t01	Wine grape	mitochondrion	1.44	7.14
VIT_06s0080g00050.t01	Wine grape	plasma membrane	1.05	4.82
VIT_09s0002g03560.t01	Wine grape	endoplasmic reticulum, golgi, plastid	1.83	3.29
VIT_07s0005g02250.t01	Wine grape	plasma membrane	0.66	1.51
VIT_09s0002g05510.t01	Wine grape	cytosol	0.26	0.98
VIT_09s0002g06940.t01	Wine grape	cytosol	0.26	0.83
KRH67878	Soybean	cytosol	0.26	0.82
VIT_09s0002g05440.t01	Wine grape	cytosol	0.13	0.78
Os10t0205500-01	Rice	cytosol, mitochondrion, peroxisome	0.26	0.66
VIT_09s0002g03570.t01	Wine grape	plasma membrane	0.26	0.62
VIT_09s0002g05540.t01	Wine grape	extracellular, golgi	0.0	0.0
VIT_12s0057g00280.t01	Wine grape	cytosol	0.0	0.0
VIT_07s0005g02320.t01	Wine grape	endoplasmic reticulum, extracellular, golgi	0.0	0.0
VIT_06s0061g01460.t01	Wine grape	endoplasmic reticulum, plasma membrane	0.0	0.0
VIT_02s0012g02770.t01	Wine grape	cytosol	0.0	0.0
VIT_18s0001g10650.t01	Wine grape	mitochondrion	0.0	0.0

Protein Annotations

MapMan:24.1.3.2.2	Gene3D:3.40.50.300	InterPro:AAA+_ATPase	InterPro:ABC_2_trans	InterPro:ABC_trans_N	InterPro:ABC_transporter-like
ProteinID:CCB46770	ProteinID:CCB46770.1	UniProt:F6H3T3	EMBL:FN595231	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0005215	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005623
GO:GO:0005886	GO:GO:0006810	GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	GO:GO:0016787
GO:GO:0016887	GO:GO:0042626	GO:GO:0055085	InterPro:IPR003439	InterPro:P-loop_NTPase	InterPro:PDR_assoc
PFAM:PF00005	PFAM:PF01061	PFAM:PF08370	PFAM:PF14510	PFscan:PS50893	PANTHER:PTHR19241
PANTHER:PTHR19241:SF443	SMART:SM00382	SUPFAM:SSF52540	TMHMM:TMhelix	UniParc:UPI00021086F4	ArrayExpress:VIT_04s0008g04830
EnsemblPlantsGene:VIT_04s0008g04830	EnsemblPlants:VIT_04s0008g04830.t01	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr4:+:4282425..4286094

Molecular Weight (calculated)

86087.9 Da

IEP (calculated)

9.144

GRAVY (calculated)

-0.021

Length

763 amino acids

Sequence
(BLAST)

001: MESSDISRVT SVRITASNIL RNSSVEVFSR SSREEDDEEA LKWAALEKLP TFLRIQRGIL TEEKGQAREI DIKSLGLRER KNLIQRLVKI DGHDNEKFLL
101: KLKERIDRVG LDSPTVEVRF EHLTVDAEAY VGSRALPTIF NISANILEGF LNYLHILPSR KKPFSILHDV SGIIKPRRMA LLLGPPSSGK TTLLLALAGR
201: LGSDLKVSGR VTYNGHGMDE FVPQRTSAYT SQYDLHAGEM TVRETLDFSA RCQGGGGLSD MLAELSRREK AANIKPDPDI DIYMKAAALE GQKTSVVTEY
301: MLKKILGLEI CADTLVGDVM KRGISGGQKK RLTTGEILVG PARALFMDEI STGLDSSTAF QIVNSLRQSI HMLNGTALIS LLQPAPETYN LFDDIILLSD
401: GKIVYQGPCE NVLEFFGYMG FKCPERKGVA DFLQEVTSRK DQEQYWARKD EPYSYVTVKE FAEAFQSFHI GQKLGDELAV PFDKTKGHPA ALTTKKYGIS
501: KRELLRACTS REFLIMKRNS FVYIFKMIQL IIVAFISMTL FLRTEMSRNT VEDGGIFMGA LFFAVLRIMF NGLTELPMTI FQLPVFYKQR GLLFFPSWAY
601: SLSKWILKMP IAFAEVGAWV IMTYYVIGFD PNIERFFKQY LLLLCIHQMA SGLLRLMAAL GRNIIVASTF GSFPLLLVVV LGGFVLSKDD VKPWWEWGYW
701: VSPLMYGQNA ISVNEFLGNS WRHVPANSTE SLGVLVLKAR GAFTEPHWYW HLGSLNQFYP RRP

Best Arabidopsis Sequence Match ( AT1G15520.1 )
(BLAST)

0001: MEGTSFHQAS NSMRRNSSVW KKDSGREIFS RSSREEDDEE ALRWAALEKL PTFDRLRKGI LTASHAGGPI NEIDIQKLGF QDTKKLLERL IKVGDDEHEK
0101: LLWKLKKRID RVGIDLPTIE VRFDHLKVEA EVHVGGRALP TFVNFISNFA DKFLNTLHLV PNRKKKFTIL NDVSGIVKPG RMALLLGPPS SGKTTLLLAL
0201: AGKLDQELKQ TGRVTYNGHG MNEFVPQRTA AYIGQNDVHI GEMTVRETFA YAARFQGVGS RYDMLTELAR REKEANIKPD PDIDIFMKAM STAGEKTNVM
0301: TDYILKILGL EVCADTMVGD DMLRGISGGQ KKRVTTGEML VGPSRALFMD EISTGLDSST TYQIVNSLRN YVHIFNGTAL ISLLQPAPET FNLFDDIILI
0401: AEGEIIYEGP RDHVVEFFET MGFKCPPRKG VADFLQEVTS KKDQMQYWAR RDEPYRFIRV REFAEAFQSF HVGRRIGDEL ALPFDKTKSH PAALTTKKYG
0501: VGIKELVKTS FSREYLLMKR NSFVYYFKFG QLLVMAFLTM TLFFRTEMQK KTEVDGSLYT GALFFILMML MFNGMSELSM TIAKLPVFYK QRDLLFYPAW
0601: VYSLPPWLLK IPISFMEAAL TTFITYYVIG FDPNVGRLFK QYILLVLMNQ MASALFKMVA ALGRNMIVAN TFGAFAMLVF FALGGVVLSR DDIKKWWIWG
0701: YWISPIMYGQ NAILANEFFG HSWSRAVENS SETLGVTFLK SRGFLPHAYW YWIGTGALLG FVVLFNFGFT LALTFLNSLG KPQAVIAEEP ASDETELQSA
0801: RSEGVVEAGA NKKRGMVLPF EPHSITFDNV VYSVDMPQEM IEQGTQEDRL VLLKGVNGAF RPGVLTALMG VSGAGKTTLM DVLAGRKTGG YIDGNITISG
0901: YPKNQQTFAR ISGYCEQTDI HSPHVTVYES LVYSAWLRLP KEVDKNKRKI FIEEVMELVE LTPLRQALVG LPGESGLSTE QRKRLTIAVE LVANPSIIFM
1001: DEPTSGLDAR AAAIVMRTVR NTVDTGRTVV CTIHQPSIDI FEAFDELFLL KRGGEEIYVG PLGHESTHLI NYFESIQGIN KITEGYNPAT WMLEVSTTSQ
1101: EAALGVDFAQ VYKNSELYKR NKELIKELSQ PAPGSKDLYF PTQYSQSFLT QCMASLWKQH WSYWRNPPYT AVRFLFTIGI ALMFGTMFWD LGGKTKTRQD
1201: LSNAMGSMYT AVLFLGLQNA ASVQPVVNVE RTVFYREQAA GMYSAMPYAF AQVFIEIPYV LVQAIVYGLI VYAMIGFEWT AVKFFWYLFF MYGSFLTFTF
1301: YGMMAVAMTP NHHIASVVSS AFYGIWNLFS GFLIPRPSMP VWWEWYYWLC PVAWTLYGLI ASQFGDITEP MADSNMSVKQ FIREFYGYRE GFLGVVAAMN
1401: VIFPLLFAVI FAIGIKSFNF QKR

Arabidopsis Description

ABCG40ABC transporter G family member 40 [Source:UniProtKB/Swiss-Prot;Acc:Q9M9E1]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.