CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 3
mitochondrion 4
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY69298	Canola	cytosol	20.81	31.31
KRH67875	Soybean	plastid	80.2	29.58
CDY69297	Canola	plasma membrane	34.23	24.17
CDY63360	Canola	plasma membrane	57.38	21.92
CDY68749	Canola	cytosol	59.06	21.36
Solyc08g067610.2.1	Tomato	cytosol, peroxisome, plasma membrane	71.81	14.72
PGSC0003DMT400034124	Potato	plastid	70.13	14.65
VIT_09s0002g05600.t01	Wine grape	mitochondrion	70.47	14.48
KXG32868	Sorghum	plasma membrane	70.13	14.38
VIT_09s0002g05530.t01	Wine grape	plasma membrane, plastid	70.13	14.32
VIT_09s0002g05590.t01	Wine grape	plasma membrane	69.13	14.17
VIT_09s0002g05570.t01	Wine grape	plasma membrane	69.13	14.17
VIT_09s0002g05410.t01	Wine grape	plasma membrane, plastid	68.12	14.13
CDY36535	Canola	plastid	68.46	13.97
CDY39620	Canola	plastid	68.12	13.89
VIT_09s0002g05360.t01	Wine grape	plasma membrane	68.79	13.77
VIT_09s0002g05400.t01	Wine grape	mitochondrion, plasma membrane	69.46	13.24
CDY08278	Canola	cytosol, nucleus, plasma membrane	60.07	12.82
VIT_09s0002g05490.t01	Wine grape	mitochondrion	54.36	12.67
CDY68759	Canola	mitochondrion	0.67	1.18
CDY07589	Canola	cytoskeleton, cytosol, nucleus	0.67	1.12
CDY55993	Canola	endoplasmic reticulum, extracellular	0.0	0.0
CDY55994	Canola	extracellular	0.0	0.0
CDY58246	Canola	plasma membrane	0.0	0.0
CDY58249	Canola	plasma membrane	0.0	0.0

Protein Annotations

MapMan:24.1.3.2.2	Gene3D:3.40.50.300	GO:A0A078JJ72	UniProt:A0A078JJ72	InterPro:AAA+_ATPase	InterPro:ABC_transporter-like
EnsemblPlants:CDY65846	ProteinID:CDY65846	ProteinID:CDY65846.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0005524	GO:GO:0016787	GO:GO:0016887	EnsemblPlantsGene:GSBRNA2T00050888001	InterPro:IPR003439
InterPro:P-loop_NTPase	PFAM:PF00005	PFscan:PS50893	PANTHER:PTHR19241	PANTHER:PTHR19241:SF322	SMART:SM00382
SUPFAM:SSF52540	UniParc:UPI0004EEE10D	:	:	:	:

Description

BnaCnng48840DBnaCnng48840D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JJ72]

Coordinates

chrLK034976:+:14201..15665

Molecular Weight (calculated)

33317.5 Da

IEP (calculated)

6.240

GRAVY (calculated)

-0.117

Length

298 amino acids

Sequence
(BLAST)

001: MFHLLPSKKS KIQIHKNISG IVKPSRMTLL LGPPSSGKTT FLQALAGKLD ETLQMSGRIT YCGHEFSEFV PQKTCAYISQ HDLHFGEMTV RETLDFSGRC
101: LGVGTRYQML TELSRKEREA GIKPDPEIDA FMKSIAISGQ ETSLVTDYVL KILGLDICAD ILVGDVMRRG VSGGQRKRLT TGEMLVGPAT ALFMDEISTG
201: LDSSTTFQIC KFMRQLVHIS DVTMIISLLQ PAPETFELFD DIILLSEGHI VYQGPRDNVL EFFEYMGFQC PERKGVADFL QEVTSKKDQE HIRHEGSL

Best Arabidopsis Sequence Match ( AT1G15520.1 )
(BLAST)

0001: MEGTSFHQAS NSMRRNSSVW KKDSGREIFS RSSREEDDEE ALRWAALEKL PTFDRLRKGI LTASHAGGPI NEIDIQKLGF QDTKKLLERL IKVGDDEHEK
0101: LLWKLKKRID RVGIDLPTIE VRFDHLKVEA EVHVGGRALP TFVNFISNFA DKFLNTLHLV PNRKKKFTIL NDVSGIVKPG RMALLLGPPS SGKTTLLLAL
0201: AGKLDQELKQ TGRVTYNGHG MNEFVPQRTA AYIGQNDVHI GEMTVRETFA YAARFQGVGS RYDMLTELAR REKEANIKPD PDIDIFMKAM STAGEKTNVM
0301: TDYILKILGL EVCADTMVGD DMLRGISGGQ KKRVTTGEML VGPSRALFMD EISTGLDSST TYQIVNSLRN YVHIFNGTAL ISLLQPAPET FNLFDDIILI
0401: AEGEIIYEGP RDHVVEFFET MGFKCPPRKG VADFLQEVTS KKDQMQYWAR RDEPYRFIRV REFAEAFQSF HVGRRIGDEL ALPFDKTKSH PAALTTKKYG
0501: VGIKELVKTS FSREYLLMKR NSFVYYFKFG QLLVMAFLTM TLFFRTEMQK KTEVDGSLYT GALFFILMML MFNGMSELSM TIAKLPVFYK QRDLLFYPAW
0601: VYSLPPWLLK IPISFMEAAL TTFITYYVIG FDPNVGRLFK QYILLVLMNQ MASALFKMVA ALGRNMIVAN TFGAFAMLVF FALGGVVLSR DDIKKWWIWG
0701: YWISPIMYGQ NAILANEFFG HSWSRAVENS SETLGVTFLK SRGFLPHAYW YWIGTGALLG FVVLFNFGFT LALTFLNSLG KPQAVIAEEP ASDETELQSA
0801: RSEGVVEAGA NKKRGMVLPF EPHSITFDNV VYSVDMPQEM IEQGTQEDRL VLLKGVNGAF RPGVLTALMG VSGAGKTTLM DVLAGRKTGG YIDGNITISG
0901: YPKNQQTFAR ISGYCEQTDI HSPHVTVYES LVYSAWLRLP KEVDKNKRKI FIEEVMELVE LTPLRQALVG LPGESGLSTE QRKRLTIAVE LVANPSIIFM
1001: DEPTSGLDAR AAAIVMRTVR NTVDTGRTVV CTIHQPSIDI FEAFDELFLL KRGGEEIYVG PLGHESTHLI NYFESIQGIN KITEGYNPAT WMLEVSTTSQ
1101: EAALGVDFAQ VYKNSELYKR NKELIKELSQ PAPGSKDLYF PTQYSQSFLT QCMASLWKQH WSYWRNPPYT AVRFLFTIGI ALMFGTMFWD LGGKTKTRQD
1201: LSNAMGSMYT AVLFLGLQNA ASVQPVVNVE RTVFYREQAA GMYSAMPYAF AQVFIEIPYV LVQAIVYGLI VYAMIGFEWT AVKFFWYLFF MYGSFLTFTF
1301: YGMMAVAMTP NHHIASVVSS AFYGIWNLFS GFLIPRPSMP VWWEWYYWLC PVAWTLYGLI ASQFGDITEP MADSNMSVKQ FIREFYGYRE GFLGVVAAMN
1401: VIFPLLFAVI FAIGIKSFNF QKR

Arabidopsis Description

ABCG40ABC transporter G family member 40 [Source:UniProtKB/Swiss-Prot;Acc:Q9M9E1]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.