CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
cytosol 1
plasma membrane 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

endoplasmic reticulum: 27224218
mitochondrion: 28499913

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH13454	Soybean	cytosol	6.1	87.0
VIT_09s0002g05490.t01	Wine grape	mitochondrion	69.07	77.01
VIT_09s0002g05590.t01	Wine grape	plasma membrane	77.7	76.2
VIT_09s0002g05570.t01	Wine grape	plasma membrane	77.0	75.52
VIT_09s0002g05530.t01	Wine grape	plasma membrane, plastid	76.51	74.78
PGSC0003DMT400034124	Potato	plastid	74.68	74.63
VIT_09s0002g05410.t01	Wine grape	plasma membrane, plastid	74.75	74.18
VIT_09s0002g05360.t01	Wine grape	plasma membrane	76.93	73.67
KRH67878	Soybean	cytosol	12.2	71.31
VIT_09s0002g05400.t01	Wine grape	mitochondrion, plasma membrane	77.0	70.2
Solyc08g067610.2.1	Tomato	cytosol, peroxisome, plasma membrane	71.39	70.01
KXG32868	Sorghum	plasma membrane	70.55	69.24
KRH12639	Soybean	cytosol, mitochondrion, nucleus	4.42	68.48
KRH67476	Soybean	endoplasmic reticulum	68.44	67.68
KRH05086	Soybean	plasma membrane	59.54	67.38
KRH67473	Soybean	endoplasmic reticulum	57.57	67.13
KRG95761	Soybean	cytosol	16.76	63.56
KRH23526	Soybean	endoplasmic reticulum	52.95	63.5
KRG96158	Soybean	endoplasmic reticulum	61.71	60.52
KRH03783	Soybean	cytosol, nucleus, plasma membrane	59.26	59.59
KRH56668	Soybean	cytosol, nucleus, plasma membrane	58.77	59.1
KRH47215	Soybean	endoplasmic reticulum	60.8	58.5
KRH44279	Soybean	endoplasmic reticulum, mitochondrion	60.8	58.5
KRH67877	Soybean	cytosol	24.96	57.98
KRH09925	Soybean	mitochondrion	51.75	57.48
KRH54837	Soybean	cytosol	2.45	57.38
KRH50642	Soybean	plasma membrane	19.78	55.95
KRH67875	Soybean	plastid	31.28	55.2
KRG98296	Soybean	cytosol, peroxisome, plasma membrane	54.56	52.46
KRH02447	Soybean	mitochondrion	52.66	52.33
KRH50641	Soybean	cytosol	52.66	52.26
KRH72672	Soybean	plasma membrane	8.35	43.43
KRH02372	Soybean	plastid	4.14	30.26

Protein Annotations

EntrezGene:100787814	MapMan:24.1.3.2.2	Gene3D:3.40.50.300	InterPro:AAA+_ATPase	InterPro:ABCG_PDR_1	InterPro:ABCG_PDR_2
InterPro:ABC_2_trans	InterPro:ABC_trans_N	InterPro:ABC_transporter-like	EMBL:ACUP02009109	EnsemblPlantsGene:GLYMA_15G011900	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0005215	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575
GO:GO:0005623	GO:GO:0005886	GO:GO:0006810	GO:GO:0008150	GO:GO:0016020	GO:GO:0016021
GO:GO:0016787	GO:GO:0016887	GO:GO:0042626	GO:GO:0055085	UniProt:I1MCJ7	InterPro:IPR003439
EnsemblPlants:KRH09796	ProteinID:KRH09796	ProteinID:KRH09796.1	InterPro:P-loop_NTPase	InterPro:PDR_assoc	PFAM:PF00005
PFAM:PF01061	PFAM:PF08370	PFAM:PF14510	PFscan:PS50893	PANTHER:PTHR19241	PANTHER:PTHR19241:SF444
SMART:SM00382	SUPFAM:SSF52540	TMHMM:TMhelix	UniParc:UPI000233B741	SEG:seg	:

Description

hypothetical protein

Coordinates

chr15:+:914542..921313

Molecular Weight (calculated)

160723.0 Da

IEP (calculated)

7.359

GRAVY (calculated)

0.044

Length

1426 amino acids

Sequence
(BLAST)

0001: MEGSDIYRAS NSLRRSSTVW RNSGVEVFSR SSREEDDEEA LKWAALEKLP TYNRLRKGLL TASHGVANEI DVSDLGIQER QKLLERLVKV AEEDNERFLL
0101: KLKERIDRVG LDIPTIEVRY EHLNIEAEAF VGSRALPSFI NSVTNVVEGF FNLLHISTSK KKHVTILKDV SGIIKPRRMT LLLGPPSSGK TTLLLALSGK
0201: LDKTLKVSGR VTYNGHELNE FVPQRTAAYI SQHDLHIGEM TVRETLAFSA RCQGVGSRYD MLSELSRREK AANIKPDPDL DVYMKATATE GQESSLVTDY
0301: TLKILGLDIC ADTMVGDEML RGISGGQRKR VTTGEMLVGP ANALFMDEIS TGLDSSTTFQ IVSFLRQYVH ILNGTAVISL LQPAPETYDL FDDIILISDG
0401: QVVYHGPREY VLDFFESMGF RCPERKGVAD FLQEVTSKKD QAQYWARRDQ PYRFVTVTQF SEAFQSFHIG GKLGEELAVP FDKTKSHPAA LTTKKYGINK
0501: KELLKANLSR EYLLMKRNSF VYIFKLCQLS IMALMTMTLF LRTELHRNNM DDAGLYAGAL FFTLVMIMFN GMAEISMTIA KLPVFYKQRD LLFYPSWAYA
0601: IPSWILKIPV TLLEVAVWVF LTYYVIGFDP NVGRLFKQYL ILLFIGQMAS ALFRAIAALG RNMIVSNTFG AFAVLTFLTL GGFVMAKSDI KNWWIWGYWI
0701: SPLMYGQTAL MVNEFLSNSW HNSSRNLGVE YLESRGFPSS AYWYWLGLGA MAGFVLLFNV MFSAALEILG PFDKPQATIA EEESPNEVTV AEVELPRIES
0801: SGRGGSVVES SHGKKKGMVL PFEPHSITFD EVVYSVDMPQ EMKEQGVQED RLVLLKGVSG AFRPGVLTAL MGVSGAGKTT LMDVLAGRKT GGYIDGNIKI
0901: SGYPKKQETF ARISGYCEQN DIHSPHVTVY ESLLYSAWLR LPSSVDSQTR KMFIEEVMEL VELNPLRNSL VGLPGVSGLS TEQRKRLTIA VELVANPSII
1001: FMDEPTSGLD ARAAAIVMRT VRNTVDTGRT VVCTIHQPSI DIFEAFDELF LMKRGGQEIY VGPLGRHSSH LIKYFESIEG VSKIKDGYNP ATWMLEVTTS
1101: AQELSLGVDF TDLYKNSDLY RRNKQLIQEL GQPAPGSKDL YFPTQYSQSF LVQCQACLWK QRWSYWRNPP YTAVRFFFTT FIALMFGTMF WDLGSRRTTR
1201: GDLLNALGSM YTAVLFLGIQ NASSVQPVVA VERTVFYREK AAGMYSALPY AFAQVLVEIP YIFAQAVTYG LIVYAMIGFD WTAEKFFWYL FFSFFSLLYF
1301: TFYGMMAVGV TPNHHVAAIV AAAFYAIWNL FSGFIVVRPK MPVWWRWYYW ACPVAWTLYG LIASQFGDIT ERMPGEDNKM VKDFVEDYFG FKHDFVGVCA
1401: VVVAGIAVAF ALIFGVAIKT FNFQKR

Best Arabidopsis Sequence Match ( AT1G15520.1 )
(BLAST)

0001: MEGTSFHQAS NSMRRNSSVW KKDSGREIFS RSSREEDDEE ALRWAALEKL PTFDRLRKGI LTASHAGGPI NEIDIQKLGF QDTKKLLERL IKVGDDEHEK
0101: LLWKLKKRID RVGIDLPTIE VRFDHLKVEA EVHVGGRALP TFVNFISNFA DKFLNTLHLV PNRKKKFTIL NDVSGIVKPG RMALLLGPPS SGKTTLLLAL
0201: AGKLDQELKQ TGRVTYNGHG MNEFVPQRTA AYIGQNDVHI GEMTVRETFA YAARFQGVGS RYDMLTELAR REKEANIKPD PDIDIFMKAM STAGEKTNVM
0301: TDYILKILGL EVCADTMVGD DMLRGISGGQ KKRVTTGEML VGPSRALFMD EISTGLDSST TYQIVNSLRN YVHIFNGTAL ISLLQPAPET FNLFDDIILI
0401: AEGEIIYEGP RDHVVEFFET MGFKCPPRKG VADFLQEVTS KKDQMQYWAR RDEPYRFIRV REFAEAFQSF HVGRRIGDEL ALPFDKTKSH PAALTTKKYG
0501: VGIKELVKTS FSREYLLMKR NSFVYYFKFG QLLVMAFLTM TLFFRTEMQK KTEVDGSLYT GALFFILMML MFNGMSELSM TIAKLPVFYK QRDLLFYPAW
0601: VYSLPPWLLK IPISFMEAAL TTFITYYVIG FDPNVGRLFK QYILLVLMNQ MASALFKMVA ALGRNMIVAN TFGAFAMLVF FALGGVVLSR DDIKKWWIWG
0701: YWISPIMYGQ NAILANEFFG HSWSRAVENS SETLGVTFLK SRGFLPHAYW YWIGTGALLG FVVLFNFGFT LALTFLNSLG KPQAVIAEEP ASDETELQSA
0801: RSEGVVEAGA NKKRGMVLPF EPHSITFDNV VYSVDMPQEM IEQGTQEDRL VLLKGVNGAF RPGVLTALMG VSGAGKTTLM DVLAGRKTGG YIDGNITISG
0901: YPKNQQTFAR ISGYCEQTDI HSPHVTVYES LVYSAWLRLP KEVDKNKRKI FIEEVMELVE LTPLRQALVG LPGESGLSTE QRKRLTIAVE LVANPSIIFM
1001: DEPTSGLDAR AAAIVMRTVR NTVDTGRTVV CTIHQPSIDI FEAFDELFLL KRGGEEIYVG PLGHESTHLI NYFESIQGIN KITEGYNPAT WMLEVSTTSQ
1101: EAALGVDFAQ VYKNSELYKR NKELIKELSQ PAPGSKDLYF PTQYSQSFLT QCMASLWKQH WSYWRNPPYT AVRFLFTIGI ALMFGTMFWD LGGKTKTRQD
1201: LSNAMGSMYT AVLFLGLQNA ASVQPVVNVE RTVFYREQAA GMYSAMPYAF AQVFIEIPYV LVQAIVYGLI VYAMIGFEWT AVKFFWYLFF MYGSFLTFTF
1301: YGMMAVAMTP NHHIASVVSS AFYGIWNLFS GFLIPRPSMP VWWEWYYWLC PVAWTLYGLI ASQFGDITEP MADSNMSVKQ FIREFYGYRE GFLGVVAAMN
1401: VIFPLLFAVI FAIGIKSFNF QKR

Arabidopsis Description

ABCG40ABC transporter G family member 40 [Source:UniProtKB/Swiss-Prot;Acc:Q9M9E1]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.