CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 3
cytosol 1
plasma membrane 2
peroxisome 1

Predictors

GFP

MS/MS

Papers

endoplasmic reticulum: 27224218
mitochondrion: 28499913

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH13454	Soybean	cytosol	5.76	74.0
KRH67878	Soybean	cytosol	13.71	72.13
KRH44279	Soybean	endoplasmic reticulum, mitochondrion	81.85	70.92
KRH47215	Soybean	endoplasmic reticulum	81.7	70.78
VIT_09s0002g05510.t01	Wine grape	cytosol	11.06	69.61
KRH67877	Soybean	cytosol	26.4	55.21
KRH50642	Soybean	plasma membrane	21.34	54.37
KRG95761	Soybean	cytosol	15.81	53.99
KRH09796	Soybean	mitochondrion	57.48	51.75
KRH67875	Soybean	plastid	32.55	51.73
KRH12639	Soybean	cytosol, mitochondrion, nucleus	3.66	51.09
KRG96158	Soybean	endoplasmic reticulum	57.24	50.55
KRH67473	Soybean	endoplasmic reticulum	47.74	50.12
KRH05086	Soybean	plasma membrane	47.59	48.49
KRH54837	Soybean	cytosol	2.26	47.54
KRH67476	Soybean	endoplasmic reticulum	53.12	47.3
KRH03783	Soybean	cytosol, nucleus, plasma membrane	51.87	46.97
KRH56668	Soybean	cytosol, nucleus, plasma membrane	51.79	46.9
KRH02447	Soybean	mitochondrion	51.01	45.64
KRH50641	Soybean	cytosol	50.7	45.3
KRG98296	Soybean	cytosol, peroxisome, plasma membrane	50.93	44.1
KRH23526	Soybean	endoplasmic reticulum	39.1	42.22
KRH02372	Soybean	plastid	5.45	35.9
KRH72672	Soybean	plasma membrane	1.4	6.57

Protein Annotations

MapMan:24.1.3.2.2	Gene3D:3.40.50.300	InterPro:AAA+_ATPase	InterPro:ABCG_PDR_1	InterPro:ABCG_PDR_2	InterPro:ABC_2_trans
InterPro:ABC_trans_N	InterPro:ABC_transporter-like	EMBL:ACUP02009113	EnsemblPlantsGene:GLYMA_15G019200	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0005215	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005623
GO:GO:0005886	GO:GO:0006810	GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	GO:GO:0016787
GO:GO:0016887	GO:GO:0042626	GO:GO:0055085	UniProt:I1MCU3	InterPro:IPR003439	EnsemblPlants:KRH09925
ProteinID:KRH09925	ProteinID:KRH09925.1	InterPro:P-loop_NTPase	InterPro:PDR_assoc	PFAM:PF00005	PFAM:PF01061
PFAM:PF08370	PFAM:PF14510	PFscan:PS50893	PANTHER:PTHR19241	PANTHER:PTHR19241:SF224	SMART:SM00382
SUPFAM:SSF52540	TMHMM:TMhelix	UniParc:UPI000296A39B	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr15:+:1468479..1479115

Molecular Weight (calculated)

145387.0 Da

IEP (calculated)

7.535

GRAVY (calculated)

-0.097

Length

1284 amino acids

Sequence
(BLAST)

0001: MESGNLTRSI SRSLSRSSWR MEGVFASGRY SRRTSNVDED EEALKWAAIE RLPTYDRLRT SILQTFAEAD NADARPSTLQ HREVDVRKLD VNERQEFIDR
0101: IFKVAEEDNE KYLRKFRNRL DKVGIRLPTV EVRYQNLIVE ADCYIGSRAL PTLPNVALNI AESALGLCGI STAKRTKLTI LKNVTGIIKP SRMALLLGPP
0201: SSGKTTLLLA LAGKLDNDLR VNGEISYNGY KLNEFVPRKT SAYISQNDVH IGEMTVKETL DFSARCQGVG TRYDLLSELA RREKEAGIFP EAELDLFMKA
0301: TAMEGTESSL ITDYTLKILG LDICKDTIVG DEMQRGVSGG QKKRVTTGEM IVGPTKTLFM DEISTGLDSS TTYQIVKCFQ QIVHLTEATI FMSLLQPAPE
0401: TFDLFDDIIL ISEGQIVYQG PRDHIVEFFE SCGFRCPERK GTADFLQEVT SRKDQEQYWA NRSLPYRYIT VSEFANRFKQ FHVGMQLENE LSVPYDKSRG
0501: HRAALVFKKY TVPTMGLLKA CWDKEWLLIK RNAFVYVFKT GQIVIIGIIA ATVFFRTNMH QRNEADAAVY IGSILFTMIM NMFNGFAELP LTIARLPIFY
0601: KHRDHLFHPP WTYTLPNFIL RIPITMFEAI VWVLITYYTI GLAPEASRFF KHLLLVFLVQ QMAAGMFRFI SGVSRTMIIA NTGGSLMLLL VFLLGGFILP
0701: KSSIPNWWIW GYWISPLTYG YNAFTVNELF APRWSKPSSD GRTPIGIATL NNFDVFTEKR WYWIGVAALV GFIILYNVLF TFALMYLDPI GKKQAIISEE
0801: EASEMEGEGN FSEDPRLLKP EPNREIALQS LSSTDGNNTR EVAMQQMGSR GNPSGIRSVD SMHESATGVA PKRGMVLPFQ PLAMSFDSVN YYVDMPAEMK
0901: GQGVTDDRLQ LLREVTGAFR PGVLTALMGV SGAGKTTLMD VLAGRKTGGY IEGDVRISGF PKNQETFARI SGYCEQTDIH SPQVTVRESL IYSAFLRLPK
1001: EVNNEEKMKF VDEVMDLVEL NNLKDAIVGL PGVTGLSTEQ RKRLTIAVEL VANPSIIFMD EPTSGLDARA AAIVMRTVRN TVDTGRTVVC TIHQPSIDIF
1101: EAFDELLLMK RGGQVIYSGP LGRNSHKIIE YFEAIPEVPK IKDKYNPATW MLEVSSMAAE VRLQMDFAEY YKSSSLYQRN KALIRELGTP PPGAKDLYFP
1201: TQYSQSTWEQ FKSCLWKQWL TYWRSPDYNL VRFFFTLAAA FLVGTVFWRV GKNRDNTGDL NTIIGALYVQ FFFFFFFFLV LFNQ

Best Arabidopsis Sequence Match ( AT1G15210.1 )
(BLAST)

0001: MDYDPAHAMS RGGSMRQTIS RSVSKASRNM EDIFNTSSRR TKSVNEDEEA LKWASIEKLP TYNRLRTSLM PELGEDDVYG NQILNKAVDV TKLDGEERQK
0101: FIDMVFKVAE QDNERILTKL RNRIDRVGIQ LPTVEVRYDH LTVKADCYTG DRSLPSLLNA VRNMGEAALG MIGIRLAKKA QLTILKDVSG IVKPSRMTLL
0201: LGPPSSGKTT LLLALAGKLD KSLDVSGEVT YNGYRLNEFV PIKTSAYISQ NDLHVGIMTV KETLDFSARC QGVGTRYDLL NELARREKDA GIFPEADVDL
0301: FMKASAAQGV KSSLITDYTL KILGLDICKD TIVGDDMMRG ISGGQKKRVT TGEMIVGPTK TLFMDEISTG LDSSTTFQIV KCLQQIVHLT EATVLISLLQ
0401: PAPETFDLFD DIILLSEGQI VYQGPRDHIL EFFESFGFKC PERKGTADFL QEVTSKKDQE QYWVDPNRPY RYIPVSEFAS SFKKFHVGSK LSNELSVPYD
0501: KSKSHKAALM FDKYSIKKTE LLKSCWDKEW MLMKRNSFFY VFKTVQIIII AAITSTLYLR TEMHTRNEID ANIYVGSLLF AMIVNMFNGL AEMAMTIQRL
0601: PVFYKQRDLL FHPPWTYTLP TFLLGIPISI FESTAWMVVT YYSIGYAPDA ERFFKQFLII FLIQQMAAGI FRFIASTCRT MTIANTGGVL VLLVVFLTGG
0701: FLLPRSEIPV WWRWAYWISP LSYAFNAITV NELFAPRWMN KMSGNSTTRL GTSVLNIWDV FDDKNWYWIG VGGLLGFTVI FNGFFTLALT YLDPLGKAQA
0801: ILPKEEDEEA KGKAGSNKET EMESVSAKKG MVLPFTPLAM SFDDVKYFVD MPAEMREQGV QETRLQLLKG VTSAFRPGVL TALMGVSGAG KTTLMDVLAG
0901: RKTGGYIEGD VRVSGFPKKQ ETFARISGYC EQTDIHSPQV TVRESLIFSA FLRLAKEVSK EDKLMFVDQV MELVELVDLR DAIVGLPGVT GLSTEQRKRL
1001: TIAVELVANP SIIFMDEPTS GLDARAAAIV MRAVRNTVDT GRTVVCTIHQ PSIDIFEAFD ELLLMKRGGH VIYSGPLGRN SHKVVEYFES FPGVPKIPEK
1101: YNPATWMLEA SSLAAELKLG VDFAELYKAS ALCQRNKALV QELSVPPQGA TDLYFATQFS QNTWGQFKSC LWKQWWTYWR SPDYNLVRFI FTLATSLMIG
1201: SVFWQIGGKR SNVQDLTMVI GAIYAAVVFV GINNCSTVQP MVAVERTVFY REKAAGMYSA IPYAISQVTC ELPYVLIQTT YYSLIIYSMV GFEWKASKFL
1301: WFIFINYFSF LYWTYYGMMT VSLTPNQQVA SIFASAFYGI FNLFSGFFIP RPKIPKWWVW YYWICPVAWT IYGLITSQYG DVETPIALLG GAPGLTVKQY
1401: IKDQYGFESD YMGPVAGVLV GFTVFFAFIF AFCIKTLNFQ SR

Arabidopsis Description

ABCG35PDR7 [Source:UniProtKB/TrEMBL;Acc:A0A178WAD4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.