CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

plastid 3
cytosol 1
plasma membrane 2
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

endoplasmic reticulum: 27224218
endoplasmic reticulum: 28499913
mitochondrion: 28499913

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH44279	Soybean	endoplasmic reticulum, mitochondrion	98.38	98.38
KRH09925	Soybean	mitochondrion	70.78	81.7
KRH13454	Soybean	cytosol	4.99	74.0
VIT_09s0002g05510.t01	Wine grape	cytosol	9.72	70.59
KRH67878	Soybean	cytosol	11.34	68.85
KRH09796	Soybean	mitochondrion	58.5	60.8
KRG96158	Soybean	endoplasmic reticulum	57.15	58.25
KRH05086	Soybean	plasma membrane	49.39	58.1
KRH67476	Soybean	endoplasmic reticulum	55.26	56.8
KRH67473	Soybean	endoplasmic reticulum	46.76	56.66
KRH12639	Soybean	cytosol, mitochondrion, nucleus	3.51	56.52
KRH67877	Soybean	cytosol	23.35	56.35
KRH50642	Soybean	plasma membrane	18.89	55.56
KRG95761	Soybean	cytosol	13.97	55.05
KRH03783	Soybean	cytosol, nucleus, plasma membrane	52.5	54.87
KRH56668	Soybean	cytosol, nucleus, plasma membrane	52.43	54.8
KRH54837	Soybean	cytosol	2.23	54.1
KRH02447	Soybean	mitochondrion	50.88	52.54
KRH23526	Soybean	endoplasmic reticulum	42.11	52.48
KRH50641	Soybean	cytosol	50.47	52.05
KRH67875	Soybean	plastid	28.27	51.86
KRG98296	Soybean	cytosol, peroxisome, plasma membrane	51.21	51.18
KRH72672	Soybean	plasma membrane	7.49	40.51
KRH02372	Soybean	plastid	4.25	32.31

Protein Annotations

EntrezGene:100806025	MapMan:24.1.3.2.2	Gene3D:3.40.50.300	InterPro:AAA+_ATPase	InterPro:ABCG_PDR_2	InterPro:ABC_2_trans
InterPro:ABC_trans_N	InterPro:ABC_transporter-like	EMBL:ACUP02004142	EnsemblPlantsGene:GLYMA_07G015800	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0005215	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005623
GO:GO:0005886	GO:GO:0006810	GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	GO:GO:0016787
GO:GO:0016887	GO:GO:0042626	GO:GO:0055085	UniProt:I1KGJ0	InterPro:IPR003439	EnsemblPlants:KRH47215
ProteinID:KRH47215	ProteinID:KRH47215.1	InterPro:P-loop_NTPase	InterPro:PDR_assoc	PFAM:PF00005	PFAM:PF01061
PFAM:PF08370	PFAM:PF14510	PFscan:PS50893	PANTHER:PTHR19241	PANTHER:PTHR19241:SF224	SMART:SM00382
SUPFAM:SSF52540	TMHMM:TMhelix	UniParc:UPI0002337D9C	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr7:-:1258348..1267593

Molecular Weight (calculated)

167753.0 Da

IEP (calculated)

8.025

GRAVY (calculated)

0.013

Length

1482 amino acids

Sequence
(BLAST)

0001: MDGNNISRSI SRSISRSSWK MEEVFASGRY SRRTSHVEED EEALKWAAIE KLPTYDRLRT SIIQTFAEGD QTGVHKEIDV RKLDVNDRQQ IIDKIFRVAE
0101: EDNEKFLKKF RNRIDKVGIR LPTVEVRFQN LTVEADSYVG SRALPTLPNV ALNLLESALG IFGISTAKRT KLTILKNASG IVKPARMALL LGPPSSGKTT
0201: LLLALAGKLD PELRVKGEIT YNGHKLNEFV PRKTSAYISQ NDVHVGEMTV KETLDFSARC QGVGTRYDLL TELARREKEA GIFPEADVDL FMKATAMEGT
0301: ESSLITDYTL KILGLDICKD TIVGDEMHRG VSGGQKKRVT TGEMIVGPTK TLFMDEISTG LDSSTTYQIV KCLQQIVHLN EGTILMSLLQ PAPETFNLFD
0401: DIILISEGQI VYQGPRDHIV EFFESCGFRC PERKGTADFL QEVTSRKDQE QYWADKNMPY RYVTVTEFAN KFKRFHVGIR LESELSVPFD KSSAHKAALV
0501: YSKNSVPTMD LFKACWDKEW LLIKRNSFVY IFKTAQIIFI AFIAATLFLR TEMHRNNEDD AALYIGAILF TMIMNMFNGF AELALTIGRL PVFYKHRDHL
0601: FHPAWTYTLP NFLLRIPISV FESLVWVGVT YYIIGFAPDA SRFFKQLLLV FLIQQMAAGM FRVISGVCRT MIIANTGGAL MLLLVFLLGG FILPKREIPD
0701: WWVWAYWVSP LTYGFNALAV NEMLAPRWMH PQTSSDKTTT LGLSILRNFD VYAKKDWYWI GAAALLGFTV LYNVLFTLAL MYLNPLGKKQ AIISEEDASE
0801: MEAGGDANEE PRLVRPPSNR ESMLRSLSTA DGNNSREVAM QRMGSQATSG LRKVDSANDS ATGVTPKKGM ILPFQPLAMS FDTVNYYVDM PAEMRDQGVT
0901: EDRLQLLRGV TSSFRPGVLT ALMGVSGAGK TTLMDVLAGR KTGGYIEGDI RISGFPKNQE TFARVSGYCE QTDIHSPQVT IRESLLYSAY LRLPKEVSKD
1001: EKIQFVDQVM DLVELDNLKD AIVGLPGVTG LSTEQRKRLT IAVELVANPS IIFMDEPTSG LDARAAAIVM RTVRNTVDTG RTVVCTIHQP SIDIFEAFDE
1101: LLLMKRGGQV IYSGPLGRNS HKIVEYFEAI PGVPKIKEMY NPATWMLEVS SVAAEVRLGM DFAEYYKTSS LFQRNKALVK ELSTPPPGAT DLYFPTKYSQ
1201: STLGQFKSCF WKQWLTYWRS PDYNLVRYFF TLACALMIGT VFWRIGKNRE SSADLTMIIG AMYAAVIFVG INNCQTVQPI VAVERTVFYR ERAAGMYAPL
1301: PYALAQVFCE VPYVFFQTVY YSLIVYAMVS FEWKVEKFFW FFFVSFFSFL YFTYYGMMTV SITPNHQVAS IFAAAFYGLF NLFSGFFIPR PKIPKWWVWY
1401: YWICPVAWTV YGLIVSQYRD IEDHLFVPGS TTQNFTVKGY IEDHYGFKSD FMGPVAAVLV AFTVFFAFVF SFCIRALNFQ TR

Best Arabidopsis Sequence Match ( AT1G59870.1 )
(BLAST)

0001: MDYNPNLPPL GGGGVSMRRS ISRSVSRASR NIEDIFSSGS RRTQSVNDDE EALKWAAIEK LPTYSRLRTT LMNAVVEDDV YGNQLMSKEV DVTKLDGEDR
0101: QKFIDMVFKV AEQDNERILT KLRNRIDRVG IKLPTVEVRY EHLTIKADCY TGNRSLPTLL NVVRNMGESA LGMIGIQFAK KAQLTILKDI SGVIKPGRMT
0201: LLLGPPSSGK TTLLLALAGK LDKSLQVSGD ITYNGYQLDE FVPRKTSAYI SQNDLHVGIM TVKETLDFSA RCQGVGTRYD LLNELARREK DAGIFPEADV
0301: DLFMKASAAQ GVKNSLVTDY TLKILGLDIC KDTIVGDDMM RGISGGQKKR VTTGEMIVGP TKTLFMDEIS TGLDSSTTFQ IVKCLQQIVH LNEATVLMSL
0401: LQPAPETFDL FDDIILVSEG QIVYQGPRDN ILEFFESFGF KCPERKGTAD FLQEVTSKKD QEQYWVNPNR PYHYIPVSEF ASRYKSFHVG TKMSNELAVP
0501: FDKSRGHKAA LVFDKYSVSK RELLKSCWDK EWLLMQRNAF FYVFKTVQIV IIAAITSTLF LRTEMNTRNE GDANLYIGAL LFGMIINMFN GFAEMAMMVS
0601: RLPVFYKQRD LLFYPSWTFS LPTFLLGIPS SILESTAWMV VTYYSIGFAP DASRFFKQFL LVFLIQQMAA SLFRLIASVC RTMMIANTGG ALTLLLVFLL
0701: GGFLLPKGKI PDWWGWAYWV SPLTYAFNGL VVNEMFAPRW MNKMASSNST IKLGTMVLNT WDVYHQKNWY WISVGALLCF TALFNILFTL ALTYLNPLGK
0801: KAGLLPEEEN EDADQGKDPM RRSLSTADGN RRGEVAMGRM SRDSAAEASG GAGNKKGMVL PFTPLAMSFD DVKYFVDMPG EMRDQGVTET RLQLLKGVTG
0901: AFRPGVLTAL MGVSGAGKTT LMDVLAGRKT GGYIEGDVRI SGFPKVQETF ARISGYCEQT DIHSPQVTVR ESLIFSAFLR LPKEVGKDEK MMFVDQVMEL
1001: VELDSLRDSI VGLPGVTGLS TEQRKRLTIA VELVANPSII FMDEPTSGLD ARAAAIVMRA VRNTVDTGRT VVCTIHQPSI DIFEAFDELM LMKRGGQVIY
1101: AGPLGQNSHK VVEYFESFPG VSKIPEKYNP ATWMLEASSL AAELKLSVDF AELYNQSALH QRNKALVKEL SVPPAGASDL YFATQFSQNT WGQFKSCLWK
1201: QWWTYWRSPD YNLVRFIFTL ATSLLIGTVF WQIGGNRSNA GDLTMVIGAL YAAIIFVGIN NCSTVQPMVA VERTVFYRER AAGMYSAMPY AISQVTCELP
1301: YVLIQTVYYS LIVYAMVGFE WKAEKFFWFV FVSYFSFLYW TYYGMMTVSL TPNQQVASIF ASAFYGIFNL FSGFFIPRPK IPKWWIWYYW ICPVAWTVYG
1401: LIVSQYGDVE TRIQVLGGAP DLTVKQYIED HYGFQSDFMG PVAAVLIAFT VFFAFIFAFC IRTLNFQTR

Arabidopsis Description

ABCG36ABC transporter G family member 36 [Source:UniProtKB/Swiss-Prot;Acc:Q9XIE2]
SUBAcon: [plasma membrane,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.