Factsheet for Solyc06g071210.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
plastid 3
cytosol 4
mitochondrion 2

Predictors

GFP

MS/MS

Papers

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400083117	Potato	cytosol, plastid	98.07	98.07
KRH56989	Soybean	cytosol	44.21	76.87
KRH03389	Soybean	plastid	65.02	73.01
VIT_17s0000g07520.t01	Wine grape	cytosol, plastid	68.67	70.8
Solyc10g074930.1.1	Tomato	cytosol, plastid	53.86	52.84
Solyc03g095510.2.1	Tomato	cytosol	51.72	52.05
Solyc12g088820.1.1	Tomato	cytosol	29.83	27.91
Solyc12g009010.1.1	Tomato	cytosol	29.18	26.72
Solyc06g008330.1.1	Tomato	cytosol	29.18	26.51
Solyc04g078870.2.1	Tomato	cytosol	29.83	26.33
Solyc09g066460.2.1	Tomato	cytosol	29.18	25.28
Solyc08g062670.2.1	Tomato	cytosol	28.11	25.19
Solyc09g090200.2.1	Tomato	nucleus	28.76	24.5
Solyc03g071750.2.1	Tomato	cytosol	23.39	22.57
Solyc11g007760.1.1	Tomato	cytosol	23.82	22.47
Solyc04g080170.2.1	Tomato	cytosol	28.76	12.37
Solyc03g083590.2.1	Tomato	cytosol	28.97	11.57
Solyc03g118530.2.1	Tomato	cytosol, plastid	30.9	11.13
Solyc06g068920.2.1	Tomato	cytosol, plastid	30.26	11.02

Protein Annotations

Gene3D:1.10.510.10	MapMan:18.4.6.3	MapMan:27.7.2.1	Gene3D:3.30.200.20	ProteinID:AAX73301.1	InterPro:AGC-kinase_C
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004672	GO:GO:0004674	GO:GO:0005488
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737
GO:GO:0006464	GO:GO:0006468	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016301	GO:GO:0016310	GO:GO:0016740	GO:GO:0019538	GO:GO:0035556
InterPro:IPR000719	InterPro:IPR000961	InterPro:Kinase-like_dom_sf	PFAM:PF00069	PFAM:PF00433	ScanProsite:PS00107
ScanProsite:PS00108	PFscan:PS50011	PFscan:PS51285	PANTHER:PTHR24351	PANTHER:PTHR24351:SF116	InterPro:Pkinase_C
InterPro:Prot_kinase_dom	InterPro:Protein_kinase_ATP_BS	UniProt:Q56R02	SMART:SM00133	SMART:SM00220	SUPFAM:SSF56112
InterPro:Ser/Thr_kinase_AS	EnsemblPlantsGene:Solyc06g071210.2	EnsemblPlants:Solyc06g071210.2.1	UniParc:UPI00004F9560	SEG:seg	:

Description

Putative ribosomal-protein S6 kinase-like protein [Source:UniProtKB/TrEMBL;Acc:Q56R02]

Coordinates

chr6:+:43805964..43810046

Molecular Weight (calculated)

51939.6 Da

IEP (calculated)

7.083

GRAVY (calculated)

-0.527

Length

466 amino acids

Sequence
(BLAST)

001: MAFAAQQKKA IHSMLANKLT HLKIPDSSSS SSPPPTDPDF DFSDVFGAPT SPSSSSSFLT DPQIIHSRSH SFVGPSPRIT LSKPLPFHQE VDSEGESDSD
101: KVNTHVGTHQ TECSDGIEEI SGDEGSAVTK FGPGDFEILR MIGKGSFGKV FQVKMKGYGG EGEGDGILAM KVMRKDTVIK NNHVDYMRAE RDILTKVEHP
201: FIVQLRYSFQ TKSKLYLILD FINGGHLFYH LYRQGIFSED QARIYAAEIV SAVSHLHQRG IVHRDLKPEN ILMDGDGHVM LTDFGLAKEI DESSRSNSMC
301: GTMEYMAPEI IQSKGHNKDA DWWSVGVLLY EMLTGQPPFT HANRKKLQEK IISEKLKLLP RLTGEAHSLL KGLLQKDPSK RLGSGPRGGD EIKSHKWFRT
401: INWKKLDARE LQPKFKPDVI GRDCTANFDK CWTTMPPDDS PASTPTTGEH FQGYTYVAPN PWLSSS

Best Arabidopsis Sequence Match ( AT3G08720.1 )
(BLAST)

001: MVSSQCSVAN KNQTGKPFQK HLSLSISPPK SVLGDNLELQ FSDVFGPMPE ANSEEACDVA YDEPAVVYSR SHSLVGPSLV VSHSLKMNKL TLRETEDSVD
101: LVECVEGESI KENDEFSGND DTDSEKSPEE VSGVVGIEDF EVLKVVGQGA FGKVYQVRKK DTSEIYAMKV MRKDKIVEKN HAEYMKAERD ILTKIDHPFI
201: VQLKYSFQTK YRLYLVLDFI NGGHLFFQLY HQGLFREDLA RVYTAEIVSA VSHLHEKGIM HRDLKPENIL MDVDGHVMLT DFGLAKEFEE NTRSNSMCGT
301: TEYMAPEIVR GKGHDKAADW WSVGILLYEM LTGKPPFLGS KGKIQQKIVK DKIKLPQFLS NEAHALLKGL LQKEPERRLG SGPSGAEEIK KHKWFKAINW
401: KKLEAREVQP SFKPAVSGRQ CIANFDKCWT DMSVLDSPAS SPNSDAKANP FTNFTYVRPP HSFLHRTTSN L

Arabidopsis Description

ATPK2Serine/threonine-protein kinase AtPK2/AtPK19 [Source:UniProtKB/Swiss-Prot;Acc:Q39030]
SUBAcon: [cytosol,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.