Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, extracellular, vacuole
Predictor Summary:
Predictor Summary:
- extracellular 5
- endoplasmic reticulum 5
- vacuole 5
- plasma membrane 5
- golgi 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc04g077460.2.1 | Tomato | plasma membrane | 60.0 | 15.96 |
| Solyc02g089400.2.1 | Tomato | plasma membrane | 53.33 | 13.91 |
| Solyc02g065680.2.1 | Tomato | plasma membrane | 53.33 | 13.82 |
| Solyc06g050790.2.1 | Tomato | plasma membrane | 40.0 | 11.03 |
| Solyc05g052300.2.1 | Tomato | cytosol, peroxisome, plasma membrane | 39.17 | 10.73 |
| Solyc06g050800.2.1 | Tomato | plasma membrane | 38.33 | 10.5 |
| Solyc09g059880.1.1 | Tomato | extracellular | 9.17 | 9.48 |
| Solyc03g117350.1.1 | Tomato | plasma membrane | 35.83 | 9.11 |
Protein Annotations
| EnsemblPlants:Solyc09g059850.1.1 | EnsemblPlantsGene:Solyc09g059850.1 | GO:GO:0003333 | GO:GO:0003674 | GO:GO:0005215 | GO:GO:0005575 |
| GO:GO:0006810 | GO:GO:0008150 | GO:GO:0015171 | GO:GO:0016020 | GO:GO:0016021 | InterPro:AA_transpt_TM |
| PANTHER:PTHR22950 | PANTHER:PTHR22950:SF334 | PFAM:PF01490 | TMHMM:TMhelix | UniParc:UPI000276B939 | UniProt:K4CTR9 |
| MapMan:35.1 | : | : | : | : | : |
Description
No Description!
Coordinates
chr9:+:56191346..56192291
Molecular Weight (calculated)
13679.1 Da
IEP (calculated)
4.010
GRAVY (calculated)
1.000
Length
120 amino acids
Sequence
(BLAST)
(BLAST)
001: MLCSVYIATS FFGFLLFGDH TLDDLLANFD GEIYGSLLND VMRVSYVIPL MLVFPIVLFT LRLNIDGLFF PIQFLLPMII AYSFQSQQLS SVSYFWEQIV
101: YLTSGMPFSL LAPRILSLLV
101: YLTSGMPFSL LAPRILSLLV
001: MTVVGDVAPI PRRNSSTCSN DIAAPLLPEC HGDEVAHDEF NGASFSGAVF NLATTIIGAG IMALPATMKI LGLGLGITMI VVMAFLTDAS IEFLLRFSKA
101: GKNRSYGGLM GGSFGNPGRI LLQVAVLVNN IGVLIVYMII IGDVLAGKTE DGIHHFGVLE GWFGHHWWNG RAAILLITTL GVFAPLACFK RIDSLKFTSA
201: LSVALAVVFL IITAGISIMK LISGGVAMPR LLPDVTDLTS FWNLFTVVPV LVTAFICHYN VHSIQNELED PSQIRPVVRS ALMLCSSVYI MTSIFGFLLF
301: GDDTLDDVLA NFDTDLGIPF GSILNDAVRV SYALHLMLVF PIVFYPLRIN IDGLLFPSAR SLSTSNVRFG CLTAGLISVI FLGANFIPSI WDAFQFTGAT
401: AAVCLGFIFP ASIILKDRHD KATNRDTTLA IFMIVLAVLS NAIAIYSDAY ALFKKNAPRE
101: GKNRSYGGLM GGSFGNPGRI LLQVAVLVNN IGVLIVYMII IGDVLAGKTE DGIHHFGVLE GWFGHHWWNG RAAILLITTL GVFAPLACFK RIDSLKFTSA
201: LSVALAVVFL IITAGISIMK LISGGVAMPR LLPDVTDLTS FWNLFTVVPV LVTAFICHYN VHSIQNELED PSQIRPVVRS ALMLCSSVYI MTSIFGFLLF
301: GDDTLDDVLA NFDTDLGIPF GSILNDAVRV SYALHLMLVF PIVFYPLRIN IDGLLFPSAR SLSTSNVRFG CLTAGLISVI FLGANFIPSI WDAFQFTGAT
401: AAVCLGFIFP ASIILKDRHD KATNRDTTLA IFMIVLAVLS NAIAIYSDAY ALFKKNAPRE
Arabidopsis Description
AVT6AAmino acid transporter AVT6A [Source:UniProtKB/Swiss-Prot;Acc:Q9LI61]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.