Factsheet for Solyc06g050790.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 2
plasma membrane 4
extracellular 1
endoplasmic reticulum 1
vacuole 2
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	plastid, secretory
BaCelLo:	plastid
MultiLoc:	plasma membrane
Plant-mPloc:	plasma membrane, plastid
PProwler:	secretory
WoLF PSORT:	vacuole
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400074955	Potato	plasma membrane	97.24	96.14
KRH73229	Soybean	plasma membrane	62.3	61.45
KRH14885	Soybean	plasma membrane	62.53	61.4
Solyc05g052300.2.1	Tomato	cytosol, peroxisome, plasma membrane	56.78	56.39
Solyc06g050800.2.1	Tomato	plasma membrane	55.4	55.02
GSMUA_Achr7P22240_001	Banana	cytosol, endoplasmic reticulum, plasma membrane	51.26	49.45
Os01t0825800-01	Rice	plasma membrane	50.57	48.25
KXG33635	Sorghum	plasma membrane	51.26	47.96
TraesCS3B01G378500.1	Wheat	plasma membrane	50.34	47.82
TraesCS3A01G346700.1	Wheat	plasma membrane	50.34	47.71
TraesCS3D01G340400.1	Wheat	plasma membrane	50.34	47.71
HORVU3Hr1G088360.1	Barley	peroxisome, plasma membrane	50.57	47.01
Solyc04g077460.2.1	Tomato	plasma membrane	47.82	46.12
HORVU3Hr1G045630.2	Barley	plastid	50.11	45.8
Solyc02g065680.2.1	Tomato	plasma membrane	45.29	42.55
Solyc02g089400.2.1	Tomato	plasma membrane	44.83	42.39
Solyc09g059850.1.1	Tomato	endoplasmic reticulum, extracellular, vacuole	11.03	40.0
KRG90323	Soybean	plasma membrane, vacuole	24.83	37.11
Solyc03g117350.1.1	Tomato	plasma membrane	37.47	34.53
Zm00001d012485_P001	Maize	golgi, plasma membrane, plastid	51.49	33.63
Solyc09g059880.1.1	Tomato	extracellular	8.28	31.03
Zm00001d030531_P001	Maize	extracellular, plasma membrane, vacuole	12.64	29.89

Protein Annotations

EnsemblPlants:Solyc06g050790.2.1	EnsemblPlantsGene:Solyc06g050790.2	GO:GO:0003333	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575
GO:GO:0006810	GO:GO:0008150	GO:GO:0015171	GO:GO:0016020	GO:GO:0016021	InterPro:AA_transpt_TM
PANTHER:PTHR22950	PANTHER:PTHR22950:SF323	PFAM:PF01490	SEG:seg	TMHMM:TMhelix	UniParc:UPI0002766CF0
UniProt:K4C5M3	MapMan:24.2.3.4.7	:	:	:	:

Description

No Description!

Coordinates

chr6:+:33581820..33584858

Molecular Weight (calculated)

47664.1 Da

IEP (calculated)

6.337

GRAVY (calculated)

0.840

Length

435 amino acids

Sequence
(BLAST)

001: MTTEKQDCVC LAPLLPVEQN ERSGEGGSIS GAIFNISTGM VGAGIMSIPA TFKVLGVIPS FFVILLVGYF VEVTVDFLLK YTHSGESDSY GGLMAESFGK
101: FGSVALQICV IITNLGALII YLIIIGDVLS GNNSDGSVHL GTLQEWFGIH WWTSRAFSVL VVVVFVMLPL LSLKRIDSLR HASAISILLA VLFVVICSMM
201: AIHAMWEGKT QKLRLVPDFS HGVTFTELFT TIPVFATAFG CHVNVHPIRA ELGRPSDMTS AVRISLVLCV VIYFAVGFFG YLLFGDSIMA DMLVNFDQAS
301: DSLIGTALND IVRLSYAIHL MLVFPVMNYS LRVNVDELFF PKRPLLASET LRFFSLTCIL LAFIYGGAVA FPNIWYFFQF MGTTTVMCIM FIFPSSIVLR
401: DAHNISTTRE KMLAVLVIIF AIGTSSVAIY SNIAT

Best Arabidopsis Sequence Match ( AT3G56200.1 )
(BLAST)

001: MTPQIKTHLL PKQEPSSSEN HGSSTSGIVF NVSTSIIGAG IMSMPAAFKV LGIVPAFLII TIIAWLSTIS VGFLMKSTLA GESTTYAGVM KESFGKTGSI
101: AVQIATMVAT FGCMIIFSII IGDVLSGNEN GGPEHIGVLQ EWFGSYWWNT RIFALLFVYG FVLLPLVLRR RVERLAISSA VSFLLAVLFV VISSVLAISA
201: LVNGQTKNPR LFPELSNGGS FWQLFTASPV IVTAFTFHFN VHPIGFELKD PLQVIPATKI SVILCAAIYF ATGLFGYLLF GDATMSDILV NFDQSSGSSI
301: GSLLNDIVRL SYVLHLMLVF PLLNFSLRAN LDELLYPKKP SLEKDTKRFI GLTLALLICC FLSAIAVPDI WYFFQFMGST ITVSIAFIFP AAIVLRNIHG
401: VSTSREKIVA AIMLVLAVAT SIIAISTNLY SLAAN

Arabidopsis Description

AVT6CAmino acid transporter AVT6C [Source:UniProtKB/Swiss-Prot;Acc:Q9LYM2]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.