Factsheet for GSMUA_Achr7P22240_001

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, cytosol, plasma membrane

Predictor Summary:

nucleus 1
endoplasmic reticulum 2
plasma membrane 3
golgi 2
plastid 1
cytosol 2
extracellular 1
vacuole 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, endoplasmic reticulum, plasma membrane
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	cytosol, golgi, plasma membrane, plastid
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os01t0825800-01	Rice	plasma membrane	62.75	62.06
HORVU3Hr1G088360.1	Barley	peroxisome, plasma membrane	62.97	60.68
KXG33635	Sorghum	plasma membrane	61.42	59.57
TraesCS3B01G378500.1	Wheat	plasma membrane	59.87	58.95
TraesCS3D01G340400.1	Wheat	plasma membrane	59.65	58.61
VIT_13s0067g02220.t01	Wine grape	golgi, plasma membrane, plastid, vacuole	57.43	58.47
TraesCS3A01G346700.1	Wheat	plasma membrane	59.2	58.17
KRH31212	Soybean	plastid	54.99	56.88
HORVU3Hr1G045630.2	Barley	plastid	59.87	56.72
KRG97662	Soybean	plastid	53.88	55.73
KRH73226	Soybean	endoplasmic reticulum, plasma membrane, plastid, vacuole	52.99	55.07
KRH14877	Soybean	plasma membrane	52.33	54.63
KRH14885	Soybean	plasma membrane	52.99	53.95
KRH73229	Soybean	plasma membrane	52.55	53.74
Bra007225.1-P	Field mustard	plasma membrane	51.44	53.46
CDX72159	Canola	plasma membrane	51.22	53.23
CDY27236	Canola	plasma membrane	51.0	53.0
Solyc05g052300.2.1	Tomato	cytosol, peroxisome, plasma membrane	51.22	52.74
CDY27235	Canola	plasma membrane	47.23	52.46
PGSC0003DMT400030399	Potato	plasma membrane	50.55	52.05
Solyc06g050800.2.1	Tomato	plasma membrane	50.33	51.83
AT2G40420.1	Thale cress	plastid	50.55	51.82
Bra017005.1-P	Field mustard	plastid	51.0	51.8
CDY52929	Canola	plastid	51.0	51.69
AT3G56200.1	Thale cress	plasma membrane	49.67	51.49
PGSC0003DMT400074952	Potato	plasma membrane	50.11	51.36
Solyc06g050790.2.1	Tomato	plasma membrane	49.45	51.26
CDY66186	Canola	plasma membrane, plastid	51.22	50.77
PGSC0003DMT400074955	Potato	plasma membrane	49.45	50.68
CDY27234	Canola	plasma membrane	50.78	50.44
Bra007226.1-P	Field mustard	plasma membrane	46.56	50.24
GSMUA_Achr7P20080_001	Banana	extracellular, plasma membrane, vacuole	42.57	47.88
GSMUA_Achr8P24480_001	Banana	cytosol, golgi, plasma membrane	47.23	46.0
Zm00001d012485_P001	Maize	golgi, plasma membrane, plastid	61.42	41.59
Zm00001d030531_P001	Maize	extracellular, plasma membrane, vacuole	16.19	39.67
GSMUA_Achr1P15770_001	Banana	endoplasmic reticulum, peroxisome, plasma membrane	38.36	38.62
KRG90323	Soybean	plasma membrane, vacuole	20.84	32.3
GSMUA_Achr3P00900_001	Banana	endoplasmic reticulum, plasma membrane, vacuole	29.71	28.45

Protein Annotations

EnsemblPlants:GSMUA_Achr7P22240_001	EnsemblPlants:GSMUA_Achr7T22240_001	EnsemblPlantsGene:GSMUA_Achr7G22240_001	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:AA_transpt_TM	PANTHER:PTHR22950	PANTHER:PTHR22950:SF323	PFAM:PF01490	SEG:seg	TMHMM:TMhelix
UniParc:UPI0002949B4F	UniProt:M0TJR0	MapMan:24.2.3.4.7	:	:	:

Description

Putative Sodium-coupled neutral amino acid transporter 1 [Source:GMGC_GENE;Acc:GSMUA_Achr7G22240_001]

Coordinates

chr7:-:24760734..24763012

Molecular Weight (calculated)

47874.1 Da

IEP (calculated)

6.597

GRAVY (calculated)

0.892

Length

451 amino acids

Sequence
(BLAST)

001: MKLSSSAKGG DAVAPLLPEF RPIAASNGDG GREASVPGAV FNLATTIIGA GIMSLPAAVR VLGVVPALFL VVAAAFLADA SAEFLLRYAG SGGAAPFSYA
101: AAMGEAFGRA GSLVLHVCVG LTTAGTLTVY LVIIGDVLSG SQSEGVAHIG VLQEWFGERW WNARAVALLF TAVFIMLPLV LLRRVDSLRF TSAISVLLAV
201: VFMCISTGMA LYALFQGATE TPRLLPDFGH MSSIFELFTA VPIIVVAFTF HFNVHPIRAE LSKTSDMMVA VRISILLCSF IYAAIGFFGY LLFGESTMAD
301: VLSNFDRDTG SPIGSLLNDA VRLSYVLHLA LVFPLLFFSL RISIDELLLP QASHHASDTC RFVLLTVLLL GFIYTASILF PSIWTLFQFF GSTTAVCISL
401: IFPAAIVLRD VEGISKTRDK VVASVMLALA VVTSSIAIGS NIVSHLGGNR E

Best Arabidopsis Sequence Match ( AT3G56200.1 )
(BLAST)

001: MTPQIKTHLL PKQEPSSSEN HGSSTSGIVF NVSTSIIGAG IMSMPAAFKV LGIVPAFLII TIIAWLSTIS VGFLMKSTLA GESTTYAGVM KESFGKTGSI
101: AVQIATMVAT FGCMIIFSII IGDVLSGNEN GGPEHIGVLQ EWFGSYWWNT RIFALLFVYG FVLLPLVLRR RVERLAISSA VSFLLAVLFV VISSVLAISA
201: LVNGQTKNPR LFPELSNGGS FWQLFTASPV IVTAFTFHFN VHPIGFELKD PLQVIPATKI SVILCAAIYF ATGLFGYLLF GDATMSDILV NFDQSSGSSI
301: GSLLNDIVRL SYVLHLMLVF PLLNFSLRAN LDELLYPKKP SLEKDTKRFI GLTLALLICC FLSAIAVPDI WYFFQFMGST ITVSIAFIFP AAIVLRNIHG
401: VSTSREKIVA AIMLVLAVAT SIIAISTNLY SLAAN

Arabidopsis Description

AVT6CAmino acid transporter AVT6C [Source:UniProtKB/Swiss-Prot;Acc:Q9LYM2]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.