Factsheet for Bra007225.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 3
endoplasmic reticulum 2
plasma membrane 4
golgi 2
cytosol 1
extracellular 1
vacuole 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	plastid
iPSORT:	plastid
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	cytosol, golgi, plasma membrane, plastid
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY27236	Canola	plasma membrane	97.7	97.7
CDX72159	Canola	plasma membrane	96.08	96.08
AT3G56200.1	Thale cress	plasma membrane	89.17	88.97
Bra007226.1-P	Field mustard	plasma membrane	78.11	81.1
Bra017005.1-P	Field mustard	plastid	78.11	76.35
VIT_13s0067g02220.t01	Wine grape	golgi, plasma membrane, plastid, vacuole	62.21	60.95
KRH14877	Soybean	plasma membrane	60.14	60.42
KRH73226	Soybean	endoplasmic reticulum, plasma membrane, plastid, vacuole	60.14	60.14
Solyc05g052300.2.1	Tomato	cytosol, peroxisome, plasma membrane	60.37	59.82
KRG97662	Soybean	plastid	59.68	59.4
KRH31212	Soybean	plastid	59.45	59.17
PGSC0003DMT400030399	Potato	plasma membrane	59.68	59.13
PGSC0003DMT400074952	Potato	plasma membrane	57.6	56.82
Solyc06g050800.2.1	Tomato	plasma membrane	56.91	56.39
GSMUA_Achr7P22240_001	Banana	cytosol, endoplasmic reticulum, plasma membrane	53.46	51.44
Os01t0825800-01	Rice	plasma membrane	52.3	49.78
KXG33635	Sorghum	plasma membrane	51.38	47.96
HORVU3Hr1G088360.1	Barley	peroxisome, plasma membrane	51.61	47.86
TraesCS3B01G378500.1	Wheat	plasma membrane	49.77	47.16
TraesCS3D01G340400.1	Wheat	plasma membrane	49.77	47.06
TraesCS3A01G346700.1	Wheat	plasma membrane	49.54	46.84
HORVU3Hr1G045630.2	Barley	plastid	50.0	45.59
Bra036198.1-P	Field mustard	plasma membrane	44.93	42.76
Bra025416.1-P	Field mustard	mitochondrion, peroxisome, plasma membrane	45.16	42.61
Bra020737.1-P	Field mustard	plasma membrane	44.93	42.48
Bra014071.1-P	Field mustard	plasma membrane	41.47	40.27
Bra028420.1-P	Field mustard	plasma membrane	38.02	37.5
Bra003570.1-P	Field mustard	cytosol	38.25	36.01
Bra035175.1-P	Field mustard	plasma membrane	38.02	34.09
Bra008469.1-P	Field mustard	plasma membrane	37.56	33.82
Zm00001d012485_P001	Maize	golgi, plasma membrane, plastid	50.69	33.03
Zm00001d030531_P001	Maize	extracellular, plasma membrane, vacuole	12.9	30.43

Protein Annotations

MapMan:24.2.3.4.7	InterPro:AA/rel_permease1	InterPro:AA_transpt_TM	EnsemblPlantsGene:Bra007225	EnsemblPlants:Bra007225.1	EnsemblPlants:Bra007225.1-P
GO:GO:0003333	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0006810	GO:GO:0008150
GO:GO:0015171	GO:GO:0016020	GO:GO:0016021	GO:GO:0022857	GO:GO:0055085	UniProt:M4CSN3
PFAM:PF01490	PIRSF:PIRSF006060	PANTHER:PTHR22950	PANTHER:PTHR22950:SF323	TMHMM:TMhelix	UniParc:UPI0002542B22
SEG:seg	:	:	:	:	:

Description

AT3G56200 (E=9e-212) | amino acid transporter family protein

Coordinates

chrA09:+:28074306..28076356

Molecular Weight (calculated)

46721.1 Da

IEP (calculated)

8.719

GRAVY (calculated)

0.839

Length

434 amino acids

Sequence
(BLAST)

001: MSPPIKTPLL PKQEPSSEKH GSTSGVVFNV STSIIGAGIM SMPAAFKVLG VIPALLIITI IGWLSTISVG FLMKSTLAGE ATTYAGVMKE SFGKTGSVAV
101: QVATMVATFG CMVIFSIIIG DVLSGNDNGG SVHIGVLQEW FGSHWWNTRI FALLFTNIFI LLPLVLCRRV ERLAFSSAIS FLLAVLFVII SSVLAISALM
201: KGQTKNPRLF PDLTSGGSFW NLFTASPVIV TAFTFHFNVH PIGFELKDPL HVIPATKISV ILCAAIYFAT GLFGYLLFGD ATMSDILVNF DESSGSSIGS
301: LLNDIVRLSY ALHLMLVFPL MNFSLRANLD ELMFPTMKPS LAKDTKRFVG LTLALLICCF LSAIAVPDIW YFFQFLGSTT TVSIAFIFPA AIVLRNVHGV
401: STSREKIVAA IMLVLAVATS IVAISTNLYS LTSN

Best Arabidopsis Sequence Match ( AT3G56200.1 )
(BLAST)

001: MTPQIKTHLL PKQEPSSSEN HGSSTSGIVF NVSTSIIGAG IMSMPAAFKV LGIVPAFLII TIIAWLSTIS VGFLMKSTLA GESTTYAGVM KESFGKTGSI
101: AVQIATMVAT FGCMIIFSII IGDVLSGNEN GGPEHIGVLQ EWFGSYWWNT RIFALLFVYG FVLLPLVLRR RVERLAISSA VSFLLAVLFV VISSVLAISA
201: LVNGQTKNPR LFPELSNGGS FWQLFTASPV IVTAFTFHFN VHPIGFELKD PLQVIPATKI SVILCAAIYF ATGLFGYLLF GDATMSDILV NFDQSSGSSI
301: GSLLNDIVRL SYVLHLMLVF PLLNFSLRAN LDELLYPKKP SLEKDTKRFI GLTLALLICC FLSAIAVPDI WYFFQFMGST ITVSIAFIFP AAIVLRNIHG
401: VSTSREKIVA AIMLVLAVAT SIIAISTNLY SLAAN

Arabidopsis Description

AVT6CAmino acid transporter AVT6C [Source:UniProtKB/Swiss-Prot;Acc:Q9LYM2]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.