Factsheet for PGSC0003DMT400030399

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 2
plasma membrane 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
golgi 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	plastid
MultiLoc:	plasma membrane
Plant-mPloc:	plastid
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g052300.2.1	Tomato	cytosol, peroxisome, plasma membrane	96.35	96.35
PGSC0003DMT400074952	Potato	plasma membrane	73.52	73.18
VIT_13s0067g02220.t01	Wine grape	golgi, plasma membrane, plastid, vacuole	68.26	67.49
KRH14877	Soybean	plasma membrane	61.64	62.5
KRH73226	Soybean	endoplasmic reticulum, plasma membrane, plastid, vacuole	61.87	62.44
KRG97662	Soybean	plastid	60.96	61.24
KRH31212	Soybean	plastid	60.5	60.78
CDY27236	Canola	plasma membrane	59.82	60.37
Bra007225.1-P	Field mustard	plasma membrane	59.13	59.68
CDX72159	Canola	plasma membrane	59.13	59.68
CDY27235	Canola	plasma membrane	55.02	59.36
AT3G56200.1	Thale cress	plasma membrane	58.9	59.31
CDY27234	Canola	plasma membrane	58.9	56.83
PGSC0003DMT400074955	Potato	plasma membrane	56.85	56.59
AT2G40420.1	Thale cress	plastid	55.25	55.0
Bra007226.1-P	Field mustard	plasma membrane	52.28	54.78
CDY52929	Canola	plastid	55.25	54.38
Bra017005.1-P	Field mustard	plastid	55.02	54.28
CDY66186	Canola	plasma membrane, plastid	55.25	53.19
Os01t0825800-01	Rice	plasma membrane	53.88	51.75
GSMUA_Achr7P22240_001	Banana	cytosol, endoplasmic reticulum, plasma membrane	52.05	50.55
TraesCS3B01G378500.1	Wheat	plasma membrane	52.74	50.44
HORVU3Hr1G088360.1	Barley	peroxisome, plasma membrane	53.88	50.43
TraesCS3A01G346700.1	Wheat	plasma membrane	52.74	50.33
TraesCS3D01G340400.1	Wheat	plasma membrane	52.28	49.89
KXG33635	Sorghum	plasma membrane	52.74	49.68
HORVU3Hr1G045630.2	Barley	plastid	52.51	48.32
PGSC0003DMT400012670	Potato	plasma membrane	42.24	46.48
PGSC0003DMT400012672	Potato	plasma membrane	45.89	44.57
PGSC0003DMT400068294	Potato	plasma membrane	45.66	43.2
PGSC0003DMT400003740	Potato	plasma membrane	47.03	42.74
PGSC0003DMT400036836	Potato	plasma membrane	38.36	35.59
Zm00001d012485_P001	Maize	golgi, plasma membrane, plastid	52.28	34.38
Zm00001d030531_P001	Maize	extracellular, plasma membrane, vacuole	13.01	30.98

Protein Annotations

EnsemblPlants:PGSC0003DMT400030399	EnsemblPlantsGene:PGSC0003DMG400011639	EntrezGene:102581955	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:AA_transpt_TM	PANTHER:PTHR22950	PANTHER:PTHR22950:SF323	PFAM:PF01490	PGSC:PGSC0003DMG400011639	RefSeq:XP_006365325.1
SEG:seg	TMHMM:TMhelix	UniParc:UPI0002965858	UniProt:M1AU62	MapMan:24.2.3.4.7	:

Description

Amino acid transporter [Source:PGSC_GENE;Acc:PGSC0003DMG400011639]

Coordinates

chr5:-:47556832..47559928

Molecular Weight (calculated)

48123.6 Da

IEP (calculated)

8.955

GRAVY (calculated)

0.935

Length

438 amino acids

Sequence
(BLAST)

001: MALAKNGAEI PLLPKTEQTL FTRENQQLIL RAVFNVSTSI IGAGIMSVPA TLKVLGVIPA FVLIILVALL VDISVEFMLR LTYRGESKTY AALMNESFGK
101: IGSVAVQICI MITNLGCLIM YLIIIGDVLS GQGEHLGVLQ EWLGIHWWNS RNFAILFIVL FVMLPLVLYR RIESLWLSSA LAVLLAIVFV VICSVMAITA
201: ILNGKTVSPR MLPKMDDETS FFNLFTAVPV IVTAFTFHFN VHPIATELGK PAAMSSAVKI SLVLCAAIYF SIGIFGYLLF GDSIMPDILV NFDKSSGTSA
301: ISSMLNVVVR LSYAFHLMLV FPLLNFSLRA NLDELVFPKK PFLATDTKRF VCLSLVLLTF SYVAAIFIPS IWYIFQFMGT TTGVCIAFIF PGAIALRDVH
401: GISSRKDKII AVIMIVQAVV TSFVTIATNI YNMSGNRP

Best Arabidopsis Sequence Match ( AT3G56200.1 )
(BLAST)

001: MTPQIKTHLL PKQEPSSSEN HGSSTSGIVF NVSTSIIGAG IMSMPAAFKV LGIVPAFLII TIIAWLSTIS VGFLMKSTLA GESTTYAGVM KESFGKTGSI
101: AVQIATMVAT FGCMIIFSII IGDVLSGNEN GGPEHIGVLQ EWFGSYWWNT RIFALLFVYG FVLLPLVLRR RVERLAISSA VSFLLAVLFV VISSVLAISA
201: LVNGQTKNPR LFPELSNGGS FWQLFTASPV IVTAFTFHFN VHPIGFELKD PLQVIPATKI SVILCAAIYF ATGLFGYLLF GDATMSDILV NFDQSSGSSI
301: GSLLNDIVRL SYVLHLMLVF PLLNFSLRAN LDELLYPKKP SLEKDTKRFI GLTLALLICC FLSAIAVPDI WYFFQFMGST ITVSIAFIFP AAIVLRNIHG
401: VSTSREKIVA AIMLVLAVAT SIIAISTNLY SLAAN

Arabidopsis Description

AVT6CAmino acid transporter AVT6C [Source:UniProtKB/Swiss-Prot;Acc:Q9LYM2]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.