Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- plastid 2
- plasma membrane 4
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY27236 | Canola | plasma membrane | 89.43 | 89.63 |
| Bra007225.1-P | Field mustard | plasma membrane | 88.97 | 89.17 |
| CDX72159 | Canola | plasma membrane | 88.51 | 88.71 |
| CDY27235 | Canola | plasma membrane | 77.93 | 83.5 |
| CDY27234 | Canola | plasma membrane | 85.06 | 81.5 |
| Bra007226.1-P | Field mustard | plasma membrane | 74.02 | 77.03 |
| AT2G40420.1 | Thale cress | plastid | 76.32 | 75.45 |
| VIT_13s0067g02220.t01 | Wine grape | golgi, plasma membrane, plastid, vacuole | 62.07 | 60.95 |
| KRH14877 | Soybean | plasma membrane | 58.85 | 59.26 |
| KRG97662 | Soybean | plastid | 59.31 | 59.17 |
| KRH31212 | Soybean | plastid | 59.08 | 58.95 |
| Solyc05g052300.2.1 | Tomato | cytosol, peroxisome, plasma membrane | 59.31 | 58.9 |
| PGSC0003DMT400030399 | Potato | plasma membrane | 59.31 | 58.9 |
| KRH73226 | Soybean | endoplasmic reticulum, plasma membrane, plastid, vacuole | 58.39 | 58.53 |
| Solyc06g050800.2.1 | Tomato | plasma membrane | 57.01 | 56.62 |
| PGSC0003DMT400074952 | Potato | plasma membrane | 57.24 | 56.59 |
| GSMUA_Achr7P22240_001 | Banana | cytosol, endoplasmic reticulum, plasma membrane | 51.49 | 49.67 |
| Os01t0825800-01 | Rice | plasma membrane | 51.49 | 49.12 |
| HORVU3Hr1G088360.1 | Barley | peroxisome, plasma membrane | 51.03 | 47.44 |
| KXG33635 | Sorghum | plasma membrane | 49.66 | 46.45 |
| TraesCS3B01G378500.1 | Wheat | plasma membrane | 48.51 | 46.07 |
| TraesCS3D01G340400.1 | Wheat | plasma membrane | 48.51 | 45.97 |
| TraesCS3A01G346700.1 | Wheat | plasma membrane | 48.28 | 45.75 |
| HORVU3Hr1G045630.2 | Barley | plastid | 49.2 | 44.96 |
| AT3G30390.2 | Thale cress | plasma membrane | 44.37 | 41.96 |
| AT5G38820.2 | Thale cress | plasma membrane | 43.45 | 41.0 |
| AT1G80510.1 | Thale cress | cytosol, peroxisome, plasma membrane | 39.08 | 34.76 |
| Zm00001d012485_P001 | Maize | golgi, plasma membrane, plastid | 49.2 | 32.13 |
| Zm00001d030531_P001 | Maize | extracellular, plasma membrane, vacuole | 12.41 | 29.35 |
Protein Annotations
| MapMan:24.2.3.4.7 | EntrezGene:824786 | UniProt:A0A178VG89 | InterPro:AA/rel_permease1 | InterPro:AA_transpt_TM | ProteinID:AEE79493.1 |
| ArrayExpress:AT3G56200 | EnsemblPlantsGene:AT3G56200 | RefSeq:AT3G56200 | TAIR:AT3G56200 | RefSeq:AT3G56200-TAIR-G | EnsemblPlants:AT3G56200.1 |
| TAIR:AT3G56200.1 | EMBL:AY094388 | ProteinID:CAB87419.1 | GO:GO:0003333 | GO:GO:0003674 | GO:GO:0005215 |
| GO:GO:0005575 | GO:GO:0006810 | GO:GO:0006865 | GO:GO:0008150 | GO:GO:0015171 | GO:GO:0016020 |
| GO:GO:0016021 | GO:GO:0022857 | GO:GO:0055085 | RefSeq:NP_191179.1 | ProteinID:OAP05339.1 | PFAM:PF01490 |
| PIRSF:PIRSF006060 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 |
| PO:PO:0001185 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 |
| PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 |
| PO:PO:0009009 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 |
| PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 |
| PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | PANTHER:PTHR22950 | PANTHER:PTHR22950:SF323 | UniProt:Q9LYM2 |
| TMHMM:TMhelix | UniParc:UPI0000048876 | SEG:seg | : | : | : |
Description
AVT6CAmino acid transporter AVT6C [Source:UniProtKB/Swiss-Prot;Acc:Q9LYM2]
Coordinates
chr3:+:20849762..20852104
Molecular Weight (calculated)
47107.4 Da
IEP (calculated)
8.590
GRAVY (calculated)
0.803
Length
435 amino acids
Sequence
(BLAST)
(BLAST)
001: MTPQIKTHLL PKQEPSSSEN HGSSTSGIVF NVSTSIIGAG IMSMPAAFKV LGIVPAFLII TIIAWLSTIS VGFLMKSTLA GESTTYAGVM KESFGKTGSI
101: AVQIATMVAT FGCMIIFSII IGDVLSGNEN GGPEHIGVLQ EWFGSYWWNT RIFALLFVYG FVLLPLVLRR RVERLAISSA VSFLLAVLFV VISSVLAISA
201: LVNGQTKNPR LFPELSNGGS FWQLFTASPV IVTAFTFHFN VHPIGFELKD PLQVIPATKI SVILCAAIYF ATGLFGYLLF GDATMSDILV NFDQSSGSSI
301: GSLLNDIVRL SYVLHLMLVF PLLNFSLRAN LDELLYPKKP SLEKDTKRFI GLTLALLICC FLSAIAVPDI WYFFQFMGST ITVSIAFIFP AAIVLRNIHG
401: VSTSREKIVA AIMLVLAVAT SIIAISTNLY SLAAN
101: AVQIATMVAT FGCMIIFSII IGDVLSGNEN GGPEHIGVLQ EWFGSYWWNT RIFALLFVYG FVLLPLVLRR RVERLAISSA VSFLLAVLFV VISSVLAISA
201: LVNGQTKNPR LFPELSNGGS FWQLFTASPV IVTAFTFHFN VHPIGFELKD PLQVIPATKI SVILCAAIYF ATGLFGYLLF GDATMSDILV NFDQSSGSSI
301: GSLLNDIVRL SYVLHLMLVF PLLNFSLRAN LDELLYPKKP SLEKDTKRFI GLTLALLICC FLSAIAVPDI WYFFQFMGST ITVSIAFIFP AAIVLRNIHG
401: VSTSREKIVA AIMLVLAVAT SIIAISTNLY SLAAN
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.