Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 1
- plasma membrane 5
- golgi 2
- plastid 1
- cytosol 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX74504 | Canola | plasma membrane | 58.57 | 83.08 |
| CDY37894 | Canola | plasma membrane | 80.91 | 82.34 |
| AT3G30390.2 | Thale cress | plasma membrane | 75.27 | 75.43 |
| Bra014071.1-P | Field mustard | plasma membrane | 72.89 | 75.17 |
| CDY17030 | Canola | plasma membrane | 72.67 | 74.28 |
| CDY47589 | Canola | plasma membrane | 72.02 | 73.45 |
| CDY49071 | Canola | plasma membrane | 68.55 | 71.98 |
| Solyc02g089400.2.1 | Tomato | plasma membrane | 70.5 | 70.65 |
| CDX67416 | Canola | plasma membrane | 67.25 | 70.45 |
| Bra028420.1-P | Field mustard | plasma membrane | 66.81 | 70.0 |
| VIT_14s0083g00740.t01 | Wine grape | plasma membrane | 69.41 | 69.26 |
| PGSC0003DMT400068294 | Potato | plasma membrane | 69.2 | 68.9 |
| Solyc02g065680.2.1 | Tomato | plasma membrane | 68.98 | 68.68 |
| PGSC0003DMT400003740 | Potato | plasma membrane | 69.85 | 66.81 |
| GSMUA_Achr7P20080_001 | Banana | extracellular, plasma membrane, vacuole | 57.27 | 65.84 |
| KRH45158 | Soybean | plasma membrane | 66.16 | 65.45 |
| KRH01440 | Soybean | plasma membrane | 65.73 | 65.16 |
| KRG93742 | Soybean | plasma membrane | 65.08 | 64.79 |
| HORVU0Hr1G020180.1 | Barley | cytosol, plasma membrane | 23.86 | 64.33 |
| GSMUA_Achr8P24480_001 | Banana | cytosol, golgi, plasma membrane | 63.99 | 63.71 |
| TraesCS7B01G119000.2 | Wheat | plasma membrane | 63.12 | 63.12 |
| TraesCS7A01G212200.2 | Wheat | plasma membrane | 63.12 | 63.12 |
| HORVU7Hr1G065280.2 | Barley | plasma membrane | 63.12 | 62.99 |
| TraesCS7D01G213900.1 | Wheat | plasma membrane | 62.91 | 62.91 |
| TraesCS7D01G387200.1 | Wheat | plasma membrane | 62.26 | 62.66 |
| Os06t0275800-01 | Rice | plasma membrane | 60.74 | 62.5 |
| TraesCS7B01G293500.3 | Wheat | plasma membrane | 62.04 | 62.45 |
| Os06t0633800-01 | Rice | peroxisome | 62.04 | 62.45 |
| TraesCS7A01G391600.1 | Wheat | plasma membrane | 61.82 | 62.23 |
| EER88687 | Sorghum | cytosol, peroxisome, plasma membrane | 61.17 | 61.44 |
| EER88229 | Sorghum | plasma membrane | 61.17 | 61.44 |
| HORVU6Hr1G072350.1 | Barley | plasma membrane | 59.44 | 61.16 |
| TraesCS6A01G170700.1 | Wheat | plasma membrane | 60.52 | 60.92 |
| TraesCS6B01G317700.1 | Wheat | plasma membrane | 58.79 | 60.9 |
| TraesCS6D01G270800.1 | Wheat | plasma membrane | 58.79 | 60.9 |
| TraesCS6B01G198900.1 | Wheat | peroxisome | 60.3 | 60.7 |
| KXG29680 | Sorghum | plasma membrane | 59.87 | 60.66 |
| Zm00001d015658_P001 | Maize | plasma membrane | 59.22 | 60.53 |
| TraesCS6A01G288200.1 | Wheat | plasma membrane | 58.79 | 60.49 |
| TraesCS6D01G160400.1 | Wheat | peroxisome | 60.09 | 60.48 |
| KRH18319 | Soybean | plasma membrane | 60.95 | 60.43 |
| HORVU6Hr1G034900.1 | Barley | peroxisome | 60.09 | 60.35 |
| KRG93745 | Soybean | plasma membrane | 60.74 | 60.34 |
| Os02t0727100-01 | Rice | plasma membrane | 58.57 | 60.27 |
| Zm00001d046661_P003 | Maize | golgi, peroxisome, plasma membrane | 61.39 | 59.58 |
| Os02t0191300-01 | Rice | cytosol, peroxisome, plasma membrane | 59.0 | 59.26 |
| Zm00001d051703_P001 | Maize | plasma membrane | 58.57 | 55.33 |
| HORVU7Hr1G092550.1 | Barley | cytosol | 61.17 | 54.44 |
| Zm00001d045740_P001 | Maize | plasma membrane | 61.39 | 48.88 |
| KXG30838 | Sorghum | plasma membrane | 57.7 | 48.01 |
| AT2G40420.1 | Thale cress | plastid | 42.52 | 44.55 |
| AT3G56200.1 | Thale cress | plasma membrane | 41.0 | 43.45 |
| HORVU0Hr1G020160.1 | Barley | golgi, mitochondrion | 26.46 | 41.92 |
| AT1G80510.1 | Thale cress | cytosol, peroxisome, plasma membrane | 40.78 | 38.45 |
Protein Annotations
| MapMan:24.2.3.4.7 | EntrezGene:833873 | InterPro:AA_transpt_TM | ProteinID:AED94363.1 | ProteinID:ANM68525.1 | ProteinID:ANM68526.1 |
| ArrayExpress:AT5G38820 | EnsemblPlantsGene:AT5G38820 | RefSeq:AT5G38820 | TAIR:AT5G38820 | RefSeq:AT5G38820-TAIR-G | EnsemblPlants:AT5G38820.2 |
| Unigene:At.55231 | ProteinID:BAB08638.1 | GO:GO:0003333 | GO:GO:0003674 | GO:GO:0005215 | GO:GO:0005575 |
| GO:GO:0006810 | GO:GO:0006865 | GO:GO:0006950 | GO:GO:0008150 | GO:GO:0009719 | GO:GO:0009987 |
| GO:GO:0015171 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0071281 | GO:GO:0071369 | GO:GO:0071732 |
| RefSeq:NP_001318700.1 | RefSeq:NP_001330273.1 | RefSeq:NP_198698.1 | PFAM:PF01490 | PANTHER:PTHR22950 | PANTHER:PTHR22950:SF292 |
| TMHMM:TMhelix | UniParc:UPI00000A1328 | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chr5:+:15543156..15545448
Molecular Weight (calculated)
50156.8 Da
IEP (calculated)
5.896
GRAVY (calculated)
0.688
Length
461 amino acids
Sequence
(BLAST)
(BLAST)
001: MISGSMENLD EIRTDIVEST APLLQESSSE SNGGGEFNGA SFSGAVFNLA TTIIGAGIMA LPATMKILGL IPGITIIVLM AFLTDASIEF LLRFSNIGNQ
101: RSYGGVMDDS FGKCGRIMLQ VSILVSNIGV LIVYMIIIGD VLAGKNEYGI HHAGMLEGWF GISWWNRRTF VLLVTTLTVF APLTCFKRID SLRFTSAISV
201: ALAVVFLVIT AGITIIKLFT DGLMMPRLLP NVTDLSSFWK LFTVVPVLVN AYICHYNVHS IQNELEDPSR IKPVVRSALA MCSSVYVMTS LFGYLLFGDG
301: TLDDVLANFD TDLGIPFGSV LNDAVRFSYA AHLMLVFPVV FYPLRINIDG LIFPTAPPLT SSESDLRFGS ITAGLIAVIF LGANFIPSIW DAFQFTGATA
401: AVCIGFIFPA AVILKDRHNQ ATKRDKTIAI CMIVLAVFSN AIAIYSDAYA LFKKHTYVYP I
101: RSYGGVMDDS FGKCGRIMLQ VSILVSNIGV LIVYMIIIGD VLAGKNEYGI HHAGMLEGWF GISWWNRRTF VLLVTTLTVF APLTCFKRID SLRFTSAISV
201: ALAVVFLVIT AGITIIKLFT DGLMMPRLLP NVTDLSSFWK LFTVVPVLVN AYICHYNVHS IQNELEDPSR IKPVVRSALA MCSSVYVMTS LFGYLLFGDG
301: TLDDVLANFD TDLGIPFGSV LNDAVRFSYA AHLMLVFPVV FYPLRINIDG LIFPTAPPLT SSESDLRFGS ITAGLIAVIF LGANFIPSIW DAFQFTGATA
401: AVCIGFIFPA AVILKDRHNQ ATKRDKTIAI CMIVLAVFSN AIAIYSDAYA LFKKHTYVYP I
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.