CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
plasma membrane 3
golgi 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	nucleus, peroxisome, secretory
BaCelLo:	nucleus
MultiLoc:	plasma membrane
Plant-mPloc:	golgi
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d015658_P001	Maize	plasma membrane	95.6	96.45
Os02t0191300-01	Rice	cytosol, peroxisome, plasma membrane	88.13	87.36
HORVU6Hr1G034900.1	Barley	peroxisome	86.81	86.06
TraesCS6A01G170700.1	Wheat	plasma membrane	86.59	86.03
TraesCS6B01G198900.1	Wheat	peroxisome	86.37	85.81
TraesCS6D01G160400.1	Wheat	peroxisome	85.93	85.37
EER88687	Sorghum	cytosol, peroxisome, plasma membrane	83.52	82.79
EER88229	Sorghum	plasma membrane	67.03	66.45
VIT_14s0083g00740.t01	Wine grape	plasma membrane	65.05	64.07
PGSC0003DMT400068294	Potato	plasma membrane	64.84	63.71
Solyc02g089400.2.1	Tomato	plasma membrane	64.4	63.7
Solyc02g065680.2.1	Tomato	plasma membrane	64.4	63.28
KRH01440	Soybean	plasma membrane	63.08	61.72
CDX74504	Canola	plasma membrane	43.74	61.23
CDY35776	Canola	plasma membrane	61.54	61.14
CDY37894	Canola	plasma membrane	60.66	60.93
KRG93742	Soybean	plasma membrane	61.98	60.91
CDY45907	Canola	plasma membrane	61.54	60.87
AT3G30390.2	Thale cress	plasma membrane	61.54	60.87
Bra020737.1-P	Field mustard	plasma membrane	61.32	60.78
KRH45158	Soybean	plasma membrane	62.2	60.73
Bra025416.1-P	Field mustard	mitochondrion, peroxisome, plasma membrane	61.32	60.65
CDX86347	Canola	plasma membrane	61.32	60.65
CDX85291	Canola	mitochondrion, peroxisome, plasma membrane	61.54	60.61
PGSC0003DMT400003740	Potato	plasma membrane	63.52	59.96
AT5G38820.2	Thale cress	plasma membrane	60.66	59.87
CDY00078	Canola	plasma membrane	59.56	59.17
Bra036198.1-P	Field mustard	plasma membrane	58.9	58.77
CDY67720	Canola	plasma membrane	59.12	58.73
KRG93745	Soybean	plasma membrane	59.78	58.62
KRH18319	Soybean	plasma membrane	59.34	58.06
Bra014071.1-P	Field mustard	plasma membrane	56.7	57.72
CDY17030	Canola	plasma membrane	56.48	56.98
CDY47589	Canola	plasma membrane	56.04	56.42
KRH54971	Soybean	plasma membrane	56.92	55.11
CDY49071	Canola	plasma membrane	52.75	54.67
CDX67416	Canola	plasma membrane	52.31	54.09
Bra028420.1-P	Field mustard	plasma membrane	52.09	53.86
KXG30838	Sorghum	plasma membrane	62.2	51.08
KXG33635	Sorghum	plasma membrane	44.62	43.66
EER90107	Sorghum	cytosol, peroxisome, plastid, vacuole	36.7	34.5

Protein Annotations

EnsemblPlants:KXG29680	EnsemblPlantsGene:SORBI_3004G074500	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	InterPro:AA_transpt_TM
PANTHER:PTHR22950	PANTHER:PTHR22950:SF239	PFAM:PF01490	ProteinID:KXG29679.1	ProteinID:KXG29680	ProteinID:KXG29680.1
SEG:seg	TMHMM:TMhelix	UniParc:UPI0001C80D2F	UniProt:A0A194YPB8	MapMan:24.2.3.4.7	:

Description

hypothetical protein

Coordinates

chr4:-:6038479..6042334

Molecular Weight (calculated)

49430.0 Da

IEP (calculated)

6.584

GRAVY (calculated)

0.752

Length

455 amino acids

Sequence
(BLAST)

001: MGIGNGSSSN VSHKAMQDET TPLLPIKAEE DVVHEFDGAS FSGAVFNLST TIVGAGIMAL PASIKMLGLI PGILMIILVA LLTEASIDML VRCSHQGKIT
101: SYGWLMGDTF GQWGRIALQA SVVINNVGVL IVYMIIIGDV LSGTSSTGVH HSGVFEGWFG PHMWNSRPIV LLTTTLVVFA PLVSFKRLDS LRYTSALSVA
201: LAVVFVVITA GVAIVRLIQG TVEIPKLFPE IDGVSSVWKL FTAVPVLVTA YICHYNVHSI DNELEDKTQI KPIVQTSLGL CSSVYIATSF FAYLLFGEAT
301: LADVLANFDS DLRIPFSSVF NDIVRVSYVV HIMLVFPIVF FALRLNLDGL LFPTARHISH DNKRFTIITI SLIAVIYLAA IFVPSIWDAF QFTGATAAVL
401: IGFIFPAMII LRDPYGVSTK RDKVLAVTMI VLAVVSNSVA LYSDALNIFY RKQEA

Best Arabidopsis Sequence Match ( AT3G30390.1 )
(BLAST)

001: MTVVGDVAPI PRRNSSTCSN DIAAPLLPEC HGDEVAHDEF NGASFSGAVF NLATTIIGAG IMALPATMKI LGLGLGITMI VVMAFLTDAS IEFLLRFSKA
101: GKNRSYGGLM GGSFGNPGRI LLQVAVLVNN IGVLIVYMII IGDVLAGKTE DGIHHFGVLE GWFGHHWWNG RAAILLITTL GVFAPLACFK RIDSLKFTSA
201: LSVALAVVFL IITAGISIMK LISGGVAMPR LLPDVTDLTS FWNLFTVVPV LVTAFICHYN VHSIQNELED PSQIRPVVRS ALMLCSSVYI MTSIFGFLLF
301: GDDTLDDVLA NFDTDLGIPF GSILNDAVRV SYALHLMLVF PIVFYPLRIN IDGLLFPSAR SLSTSNVRFG CLTAGLISVI FLGANFIPSI WDAFQFTGAT
401: AAVCLGFIFP ASIILKDRHD KATNRDTTLA IFMIVLAVLS NAIAIYSDAY ALFKKNAPRE

Arabidopsis Description

AVT6AAmino acid transporter AVT6A [Source:UniProtKB/Swiss-Prot;Acc:Q9LI61]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.