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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane

Predictor Summary:
  • nucleus 1
  • plasma membrane 4
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • golgi 1
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane
Any Predictor:nucleus, plasma membrane
BaCelLo:nucleus
MultiLoc:plasma membrane
PProwler:secretory
WoLF PSORT:plasma membrane
YLoc:plasma membrane
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY67720 Canola plasma membrane 98.03 98.03
Bra036198.1-P Field mustard plasma membrane 97.38 97.81
CDX86347 Canola plasma membrane 91.27 90.87
CDX85291 Canola mitochondrion, peroxisome, plasma membrane 90.61 89.83
AT3G30390.2 Thale cress plasma membrane 88.65 88.26
CDY35776 Canola plasma membrane 87.55 87.55
CDY45907 Canola plasma membrane 87.77 87.39
CDY37894 Canola plasma membrane 72.93 73.73
CDX74504 Canola plasma membrane 51.53 72.62
Solyc02g089400.2.1 Tomato plasma membrane 71.18 70.87
VIT_14s0083g00740.t01 Wine grape plasma membrane 70.74 70.13
PGSC0003DMT400068294 Potato plasma membrane 70.52 69.76
Solyc02g065680.2.1 Tomato plasma membrane 68.78 68.03
GSMUA_Achr7P20080_001 Banana extracellular, plasma membrane, vacuole 59.39 67.83
PGSC0003DMT400003740 Potato plasma membrane 69.65 66.18
KRH01440 Soybean plasma membrane 67.03 66.02
GSMUA_Achr8P24480_001 Banana cytosol, golgi, plasma membrane 66.59 65.87
KRH45158 Soybean plasma membrane 66.81 65.67
CDY47589 Canola plasma membrane 64.63 65.49
CDY17030 Canola plasma membrane 64.19 65.19
CDY49071 Canola plasma membrane 61.79 64.46
TraesCS7A01G212200.2 Wheat plasma membrane 63.97 63.56
KRG93742 Soybean plasma membrane 64.19 63.5
TraesCS7B01G119000.2 Wheat plasma membrane 63.76 63.34
TraesCS7D01G213900.1 Wheat plasma membrane 63.76 63.34
HORVU7Hr1G065280.2 Barley plasma membrane 63.76 63.2
CDX67416 Canola plasma membrane 60.48 62.95
TraesCS6A01G288200.1 Wheat plasma membrane 61.57 62.95
EER88229 Sorghum plasma membrane 62.88 62.75
HORVU6Hr1G072350.1 Barley plasma membrane 61.35 62.72
TraesCS6B01G317700.1 Wheat plasma membrane 60.92 62.7
TraesCS6D01G270800.1 Wheat plasma membrane 60.92 62.7
Os06t0275800-01 Rice plasma membrane 61.14 62.5
Os02t0727100-01 Rice plasma membrane 60.92 62.28
HORVU0Hr1G020180.1 Barley cytosol, plasma membrane 23.14 61.99
Os06t0633800-01 Rice peroxisome 61.14 61.14
TraesCS7D01G387200.1 Wheat plasma membrane 60.92 60.92
TraesCS7B01G293500.3 Wheat plasma membrane 60.7 60.7
EER88687 Sorghum cytosol, peroxisome, plasma membrane 60.7 60.57
Zm00001d015658_P001 Maize plasma membrane 59.39 60.31
TraesCS7A01G391600.1 Wheat plasma membrane 60.26 60.26
KRH18319 Soybean plasma membrane 61.14 60.22
KRG93745 Soybean plasma membrane 60.48 59.7
KXG29680 Sorghum plasma membrane 59.17 59.56
TraesCS6B01G198900.1 Wheat peroxisome 59.39 59.39
TraesCS6A01G170700.1 Wheat plasma membrane 59.39 59.39
HORVU6Hr1G034900.1 Barley peroxisome 59.39 59.26
TraesCS6D01G160400.1 Wheat peroxisome 59.17 59.17
Zm00001d046661_P003 Maize golgi, peroxisome, plasma membrane 60.92 58.74
Zm00001d051703_P001 Maize plasma membrane 62.45 58.61
Os02t0191300-01 Rice cytosol, peroxisome, plasma membrane 58.52 58.39
HORVU7Hr1G092550.1 Barley cytosol 59.39 52.51
KXG30838 Sorghum plasma membrane 61.79 51.08
Zm00001d045740_P001 Maize plasma membrane 63.32 50.09
CDY27235 Canola plasma membrane 39.74 44.83
CDY27236 Canola plasma membrane 41.92 44.24
CDX72159 Canola plasma membrane 41.7 44.01
CDY52929 Canola plastid 41.92 43.15
CDY27234 Canola plasma membrane 42.14 42.51
HORVU0Hr1G020160.1 Barley golgi, mitochondrion 26.86 42.27
CDY66186 Canola plasma membrane, plastid 41.92 42.2
CDX79381 Canola plasma membrane 41.92 41.56
CDX67951 Canola plasma membrane 41.92 40.94
CDY37600 Canola cytosol, peroxisome, plasma membrane 41.27 39.21
CDY39969 Canola plasma membrane 41.27 39.05
CDX87318 Canola plasma membrane 41.27 39.05
CDY38675 Canola plasma membrane 40.83 38.8
Protein Annotations
EnsemblPlants:CDY00078EnsemblPlantsGene:GSBRNA2T00109572001GO:A0A078EL52InterPro:AA_transpt_TMPANTHER:PTHR22950PANTHER:PTHR22950:SF270
PFAM:PF01490ProteinID:CDY00078ProteinID:CDY00078.1SEG:segTMHMM:TMhelixUniParc:UPI0004EE42E9
MapMan:24.2.3.4.7:::::
Description
BnaC09g02230D
Coordinates
chrLK031916:+:660146..662702
Molecular Weight (calculated)
49323.9 Da
IEP (calculated)
6.230
GRAVY (calculated)
0.765
Length
458 amino acids
Sequence
(BLAST)
001: MTIQDVDPIP RRCSSSDDVA APLLPTTQGD EVAAHDEFNG ASFSGAVFNL ATTIIGAGIM ALPATMKILG LVLGITMIVV MAFLSDASIE FLLRFSKVKK
101: SRSYGGLMGD SFGKPGKVLL QVAVLVNNIG VLIVYMIIIG DVLAGKTEDG IHHYGVLEGW FGHHWWNGRL AILIITTLAV FAPLACFKRI DSLRFTSALS
201: VALAVVFLII TAGISIMKFI NGGVAMPRLF PDVSDLTSFL NLFTVVPVLV TAFICHYNVH SIQNELDDET QIKPVVRSAL VLCSSVYIMI SIFGFLLFGD
301: DTLDDVLSNF DTDLGIPLGS VLNDAVRVSY ALHLMLVFPI VFYPLRINID GLLFPSAPSL TSSNVRFGCL SAGLISVIFL GANCIPSIWD AFQFTGATAA
401: VCLGFIFPAS IILKDRHGKA SSRDTILAVF MVVLAVLANA IAIYSDAYAL FKRNAPRE
Best Arabidopsis Sequence Match ( AT3G30390.1 )
(BLAST)
001: MTVVGDVAPI PRRNSSTCSN DIAAPLLPEC HGDEVAHDEF NGASFSGAVF NLATTIIGAG IMALPATMKI LGLGLGITMI VVMAFLTDAS IEFLLRFSKA
101: GKNRSYGGLM GGSFGNPGRI LLQVAVLVNN IGVLIVYMII IGDVLAGKTE DGIHHFGVLE GWFGHHWWNG RAAILLITTL GVFAPLACFK RIDSLKFTSA
201: LSVALAVVFL IITAGISIMK LISGGVAMPR LLPDVTDLTS FWNLFTVVPV LVTAFICHYN VHSIQNELED PSQIRPVVRS ALMLCSSVYI MTSIFGFLLF
301: GDDTLDDVLA NFDTDLGIPF GSILNDAVRV SYALHLMLVF PIVFYPLRIN IDGLLFPSAR SLSTSNVRFG CLTAGLISVI FLGANFIPSI WDAFQFTGAT
401: AAVCLGFIFP ASIILKDRHD KATNRDTTLA IFMIVLAVLS NAIAIYSDAY ALFKKNAPRE
Arabidopsis Description
AVT6AAmino acid transporter AVT6A [Source:UniProtKB/Swiss-Prot;Acc:Q9LI61]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.