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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: mitochondrion, peroxisome, plasma membrane

Predictor Summary:
  • nucleus 1
  • plasma membrane 2
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • golgi 1
  • mitochondrion 1
  • peroxisome 1
Predictors GFP MS/MS Papers
Winner Takes All:mitochondrion, peroxisome, plasma membrane
Any Predictor:mitochondrion, nucleus, peroxisome, plasma membrane
BaCelLo:nucleus
MultiLoc:plasma membrane
PProwler:secretory
WoLF PSORT:mitochondrion
YLoc:peroxisome
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX86347 Canola plasma membrane 98.92 99.35
CDY35776 Canola plasma membrane 90.69 91.48
AT3G30390.2 Thale cress plasma membrane 90.91 91.3
CDY45907 Canola plasma membrane 90.91 91.3
CDY00078 Canola plasma membrane 89.83 90.61
CDY67720 Canola plasma membrane 89.61 90.39
CDY37894 Canola plasma membrane 74.68 76.16
CDX74504 Canola plasma membrane 52.6 74.77
Solyc02g089400.2.1 Tomato plasma membrane 72.51 72.83
VIT_14s0083g00740.t01 Wine grape plasma membrane 72.08 72.08
PGSC0003DMT400068294 Potato plasma membrane 71.21 71.06
GSMUA_Achr7P20080_001 Banana extracellular, plasma membrane, vacuole 60.39 69.58
Solyc02g065680.2.1 Tomato plasma membrane 69.7 69.55
PGSC0003DMT400003740 Potato plasma membrane 71.21 68.26
CDY17030 Canola plasma membrane 66.23 67.85
KRH01440 Soybean plasma membrane 67.97 67.53
CDY47589 Canola plasma membrane 65.8 67.26
GSMUA_Achr8P24480_001 Banana cytosol, golgi, plasma membrane 67.32 67.17
KRH45158 Soybean plasma membrane 67.75 67.17
CDY49071 Canola plasma membrane 63.2 66.51
KRG93742 Soybean plasma membrane 65.8 65.66
TraesCS7A01G212200.2 Wheat plasma membrane 65.37 65.51
HORVU6Hr1G072350.1 Barley plasma membrane 63.42 65.4
TraesCS7D01G213900.1 Wheat plasma membrane 65.15 65.29
CDX67416 Canola plasma membrane 62.12 65.23
TraesCS6A01G288200.1 Wheat plasma membrane 63.2 65.18
TraesCS7B01G119000.2 Wheat plasma membrane 64.94 65.08
TraesCS6B01G317700.1 Wheat plasma membrane 62.55 64.94
TraesCS6D01G270800.1 Wheat plasma membrane 62.55 64.94
HORVU7Hr1G065280.2 Barley plasma membrane 64.94 64.94
HORVU0Hr1G020180.1 Barley cytosol, plasma membrane 24.03 64.91
Os02t0727100-01 Rice plasma membrane 62.34 64.29
EER88229 Sorghum plasma membrane 63.42 63.83
Os06t0275800-01 Rice plasma membrane 61.69 63.62
Os06t0633800-01 Rice peroxisome 62.12 62.66
EER88687 Sorghum cytosol, peroxisome, plasma membrane 61.69 62.09
Zm00001d015658_P001 Maize plasma membrane 60.61 62.08
TraesCS7A01G391600.1 Wheat plasma membrane 61.47 62.01
TraesCS7D01G387200.1 Wheat plasma membrane 61.47 62.01
TraesCS7B01G293500.3 Wheat plasma membrane 61.26 61.79
KXG29680 Sorghum plasma membrane 60.61 61.54
KRH18319 Soybean plasma membrane 61.9 61.51
TraesCS6A01G170700.1 Wheat plasma membrane 60.82 61.35
TraesCS6B01G198900.1 Wheat peroxisome 60.82 61.35
HORVU6Hr1G034900.1 Barley peroxisome 60.82 61.22
TraesCS6D01G160400.1 Wheat peroxisome 60.61 61.14
KRG93745 Soybean plasma membrane 61.26 60.99
Zm00001d051703_P001 Maize plasma membrane 64.07 60.66
Zm00001d046661_P003 Maize golgi, peroxisome, plasma membrane 61.9 60.21
Os02t0191300-01 Rice cytosol, peroxisome, plasma membrane 59.74 60.13
HORVU7Hr1G092550.1 Barley cytosol 60.39 53.86
KXG30838 Sorghum plasma membrane 63.64 53.07
Zm00001d045740_P001 Maize plasma membrane 63.42 50.6
CDY27235 Canola plasma membrane 40.69 46.31
CDY27236 Canola plasma membrane 43.07 45.85
CDX72159 Canola plasma membrane 42.86 45.62
CDY27234 Canola plasma membrane 43.51 44.27
HORVU0Hr1G020160.1 Barley golgi, mitochondrion 27.71 43.99
CDY52929 Canola plastid 41.77 43.37
CDY66186 Canola plasma membrane, plastid 41.77 42.42
CDX79381 Canola plasma membrane 41.99 41.99
CDX67951 Canola plasma membrane 41.77 41.15
CDX87318 Canola plasma membrane 41.77 39.88
CDY37600 Canola cytosol, peroxisome, plasma membrane 41.56 39.83
CDY39969 Canola plasma membrane 41.56 39.67
CDY38675 Canola plasma membrane 41.13 39.42
Protein Annotations
EnsemblPlants:CDX85291EnsemblPlantsGene:GSBRNA2T00142947001GO:A0A078D7K0InterPro:AA_transpt_TMPANTHER:PTHR22950PANTHER:PTHR22950:SF270
PFAM:PF01490ProteinID:CDX85291ProteinID:CDX85291.1SEG:segTMHMM:TMhelixUniParc:UPI0004EE6C3B
MapMan:24.2.3.4.7:::::
Description
BnaC07g26020D
Coordinates
chrLK031841:-:943101..945572
Molecular Weight (calculated)
49869.5 Da
IEP (calculated)
7.217
GRAVY (calculated)
0.699
Length
462 amino acids
Sequence
(BLAST)
001: MTIKDVTPIP KRSYSPSSSS SDDVAAPLLP KSHGDEVAYD EFNGASFSGA VFNLATTIIG AGIMALPATM KILGLVLGIA MIVVMAFLTD ASIEFLLRFS
101: KIKRSRSYGG LMGDSFGKPG RVLLQVAVLV NNIGVLIVYM IIIGDVLAGK TEDGTHHYGV LEGWFGYHWW NGRAAILLIT TLGVFAPLAC FKRIDSLRFT
201: SALSVALAVV FLVITAGISI MKLISGGVAM PRLLPDVSDL TSFWNLFTVV PVLVTAFICH YNVHSIQNEL DDPAQIRPVV RSALMLCSSV YIMTSIFGFL
301: LFGDDTLDDV LANFDTDLGI PLGSVLNDAV RVSYALHLML VFPIVFYPLR INIDGLLFPS ARPLTTSNVR FGCLTAGLIS VVFLGANFIP SIWDAFQFTG
401: ATAAVCLGFI FPASIILKDR HGRATSRDTT LAVFMIVLAV LSNAIAIYSD AYALFKKNAP RE
Best Arabidopsis Sequence Match ( AT3G30390.1 )
(BLAST)
001: MTVVGDVAPI PRRNSSTCSN DIAAPLLPEC HGDEVAHDEF NGASFSGAVF NLATTIIGAG IMALPATMKI LGLGLGITMI VVMAFLTDAS IEFLLRFSKA
101: GKNRSYGGLM GGSFGNPGRI LLQVAVLVNN IGVLIVYMII IGDVLAGKTE DGIHHFGVLE GWFGHHWWNG RAAILLITTL GVFAPLACFK RIDSLKFTSA
201: LSVALAVVFL IITAGISIMK LISGGVAMPR LLPDVTDLTS FWNLFTVVPV LVTAFICHYN VHSIQNELED PSQIRPVVRS ALMLCSSVYI MTSIFGFLLF
301: GDDTLDDVLA NFDTDLGIPF GSILNDAVRV SYALHLMLVF PIVFYPLRIN IDGLLFPSAR SLSTSNVRFG CLTAGLISVI FLGANFIPSI WDAFQFTGAT
401: AAVCLGFIFP ASIILKDRHD KATNRDTTLA IFMIVLAVLS NAIAIYSDAY ALFKKNAPRE
Arabidopsis Description
AVT6AAmino acid transporter AVT6A [Source:UniProtKB/Swiss-Prot;Acc:Q9LI61]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.