CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
plasma membrane 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
golgi 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	nucleus, peroxisome, plasma membrane
BaCelLo:	nucleus
MultiLoc:	plasma membrane
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY45907	Canola	plasma membrane	98.47	98.04
CDX86347	Canola	plasma membrane	92.14	91.74
CDX85291	Canola	mitochondrion, peroxisome, plasma membrane	91.48	90.69
AT3G30390.2	Thale cress	plasma membrane	88.65	88.26
CDY67720	Canola	plasma membrane	87.77	87.77
CDY00078	Canola	plasma membrane	87.55	87.55
CDX74504	Canola	plasma membrane	53.71	75.69
CDY37894	Canola	plasma membrane	74.67	75.5
Solyc02g089400.2.1	Tomato	plasma membrane	72.93	72.61
VIT_14s0083g00740.t01	Wine grape	plasma membrane	72.71	72.08
PGSC0003DMT400068294	Potato	plasma membrane	71.18	70.41
Solyc02g065680.2.1	Tomato	plasma membrane	69.87	69.11
GSMUA_Achr7P20080_001	Banana	extracellular, plasma membrane, vacuole	59.83	68.33
PGSC0003DMT400003740	Potato	plasma membrane	71.83	68.26
CDY17030	Canola	plasma membrane	67.03	68.07
KRH01440	Soybean	plasma membrane	68.56	67.53
CDY47589	Canola	plasma membrane	66.16	67.04
KRH45158	Soybean	plasma membrane	68.12	66.95
KRG93742	Soybean	plasma membrane	67.25	66.52
CDY49071	Canola	plasma membrane	63.76	66.51
GSMUA_Achr8P24480_001	Banana	cytosol, golgi, plasma membrane	66.16	65.44
TraesCS7A01G212200.2	Wheat	plasma membrane	65.72	65.29
TraesCS7B01G119000.2	Wheat	plasma membrane	65.5	65.08
TraesCS7D01G213900.1	Wheat	plasma membrane	65.5	65.08
CDX67416	Canola	plasma membrane	62.45	65.0
HORVU7Hr1G065280.2	Barley	plasma membrane	65.28	64.72
HORVU6Hr1G072350.1	Barley	plasma membrane	63.1	64.51
HORVU0Hr1G020180.1	Barley	cytosol, plasma membrane	24.02	64.33
Os02t0727100-01	Rice	plasma membrane	62.88	64.29
Os06t0275800-01	Rice	plasma membrane	62.45	63.84
EER88229	Sorghum	plasma membrane	63.76	63.62
Os06t0633800-01	Rice	peroxisome	63.54	63.54
TraesCS6A01G288200.1	Wheat	plasma membrane	62.01	63.39
TraesCS6B01G317700.1	Wheat	plasma membrane	61.57	63.37
TraesCS6D01G270800.1	Wheat	plasma membrane	61.35	63.15
TraesCS7A01G391600.1	Wheat	plasma membrane	63.1	63.1
TraesCS7D01G387200.1	Wheat	plasma membrane	63.1	63.1
EER88687	Sorghum	cytosol, peroxisome, plasma membrane	63.1	62.96
TraesCS7B01G293500.3	Wheat	plasma membrane	62.88	62.88
TraesCS6B01G198900.1	Wheat	peroxisome	62.23	62.23
TraesCS6A01G170700.1	Wheat	plasma membrane	62.23	62.23
TraesCS6D01G160400.1	Wheat	peroxisome	62.01	62.01
HORVU6Hr1G034900.1	Barley	peroxisome	62.01	61.87
Zm00001d015658_P001	Maize	plasma membrane	60.92	61.86
KXG29680	Sorghum	plasma membrane	61.14	61.54
KRH18319	Soybean	plasma membrane	62.23	61.29
KRG93745	Soybean	plasma membrane	61.79	60.99
Zm00001d046661_P003	Maize	golgi, peroxisome, plasma membrane	62.88	60.63
Os02t0191300-01	Rice	cytosol, peroxisome, plasma membrane	60.04	59.91
Zm00001d051703_P001	Maize	plasma membrane	63.54	59.63
HORVU7Hr1G092550.1	Barley	cytosol	61.79	54.63
KXG30838	Sorghum	plasma membrane	62.66	51.81
Zm00001d045740_P001	Maize	plasma membrane	63.1	49.91
CDY27235	Canola	plasma membrane	40.39	45.57
CDY27236	Canola	plasma membrane	42.36	44.7
CDX72159	Canola	plasma membrane	42.36	44.7
HORVU0Hr1G020160.1	Barley	golgi, mitochondrion	27.95	43.99
CDY27234	Canola	plasma membrane	42.36	42.73
CDY52929	Canola	plastid	41.48	42.7
CDX79381	Canola	plasma membrane	42.36	41.99
CDY66186	Canola	plasma membrane, plastid	41.48	41.76
CDX67951	Canola	plasma membrane	42.36	41.36
CDY37600	Canola	cytosol, peroxisome, plasma membrane	41.92	39.83
CDY39969	Canola	plasma membrane	41.92	39.67
CDX87318	Canola	plasma membrane	41.92	39.67
CDY38675	Canola	plasma membrane	41.48	39.42

Protein Annotations

EnsemblPlants:CDY35776	EnsemblPlantsGene:GSBRNA2T00059234001	GO:A0A078HDI8	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:AA_transpt_TM	PANTHER:PTHR22950	PANTHER:PTHR22950:SF270	PFAM:PF01490	ProteinID:CDY35776	ProteinID:CDY35776.1
SEG:seg	TMHMM:TMhelix	UniParc:UPI0004EEFEDB	UniProt:A0A078HDI8	MapMan:24.2.3.4.7	:

Description

BnaC02g38180DBnaC02g38180D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HDI8]

Coordinates

chrLK032360:+:168566..171149

Molecular Weight (calculated)

49308.6 Da

IEP (calculated)

7.099

GRAVY (calculated)

0.661

Length

458 amino acids

Sequence
(BLAST)

001: MDDATPSQRR SSGSSSNDAA APLLPKSQGE EVAAYDEFNG ASFSGAVFNL STTIIGAGIM ALPATMKILG LVLGIAMIVV MAFLTDASIE FLLRFSKIKK
101: SRSYGGLMGD SFGKPGKILL QVAVLVNNIG VLIVYMIIIG DVLAGKTEDG THHHGVLEGW FGHHWWNGRA FVLLITTLGV FAPLACFKRI DSLRFTSALS
201: VALAVVFLVI TAGISIMKLI SGGVAMPRLL PDVSDLTSFW NLFTVVPVLV TAFICHYNVH SIQNELDDPS QIRPVVRSAL MLCSSVYIMT SIFGFLLFGD
301: DTLDDVLANF DTDLGIPFGS VLNDAVRVSY ALHLMLVFPI VFYPLRINID GLLFPSSPSL TSSNVRFGCL SAGLITVIFL GANFIPSIWD AFQFTGATAA
401: VCLGFIFPAS VILKDRHSRA TGRDTTLAVF MIVLAVMSNA VAIYSDAYAL FKKHTHRG

Best Arabidopsis Sequence Match ( AT5G38820.2 )
(BLAST)

001: MISGSMENLD EIRTDIVEST APLLQESSSE SNGGGEFNGA SFSGAVFNLA TTIIGAGIMA LPATMKILGL IPGITIIVLM AFLTDASIEF LLRFSNIGNQ
101: RSYGGVMDDS FGKCGRIMLQ VSILVSNIGV LIVYMIIIGD VLAGKNEYGI HHAGMLEGWF GISWWNRRTF VLLVTTLTVF APLTCFKRID SLRFTSAISV
201: ALAVVFLVIT AGITIIKLFT DGLMMPRLLP NVTDLSSFWK LFTVVPVLVN AYICHYNVHS IQNELEDPSR IKPVVRSALA MCSSVYVMTS LFGYLLFGDG
301: TLDDVLANFD TDLGIPFGSV LNDAVRFSYA AHLMLVFPVV FYPLRINIDG LIFPTAPPLT SSESDLRFGS ITAGLIAVIF LGANFIPSIW DAFQFTGATA
401: AVCIGFIFPA AVILKDRHNQ ATKRDKTIAI CMIVLAVFSN AIAIYSDAYA LFKKHTYVYP I

Arabidopsis Description

SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.