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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane

Predictor Summary:
  • plastid 3
  • plasma membrane 4
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • golgi 1
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane
Any Predictor:plasma membrane, plastid
BaCelLo:plastid
ChloroP:plastid
iPSORT:plastid
MultiLoc:plasma membrane
PProwler:secretory
WoLF PSORT:plasma membrane
YLoc:plasma membrane
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY27236 Canola plasma membrane 97.23 97.23
Bra007225.1-P Field mustard plasma membrane 96.08 96.08
CDY27235 Canola plasma membrane 83.87 89.66
AT3G56200.1 Thale cress plasma membrane 88.71 88.51
CDY27234 Canola plasma membrane 91.01 87.0
CDY52929 Canola plastid 79.26 77.3
CDY66186 Canola plasma membrane, plastid 78.57 74.95
VIT_13s0067g02220.t01 Wine grape golgi, plasma membrane, plastid, vacuole 62.21 60.95
KRH73226 Soybean endoplasmic reticulum, plasma membrane, plastid, vacuole 60.37 60.37
KRH14877 Soybean plasma membrane 59.91 60.19
KRG97662 Soybean plastid 59.91 59.63
Solyc05g052300.2.1 Tomato cytosol, peroxisome, plasma membrane 60.14 59.59
KRH31212 Soybean plastid 59.68 59.4
PGSC0003DMT400030399 Potato plasma membrane 59.68 59.13
PGSC0003DMT400074952 Potato plasma membrane 58.06 57.27
Solyc06g050800.2.1 Tomato plasma membrane 57.37 56.85
GSMUA_Achr7P22240_001 Banana cytosol, endoplasmic reticulum, plasma membrane 53.23 51.22
Os01t0825800-01 Rice plasma membrane 52.53 50.0
HORVU3Hr1G088360.1 Barley peroxisome, plasma membrane 52.3 48.5
KXG33635 Sorghum plasma membrane 51.61 48.17
TraesCS3B01G378500.1 Wheat plasma membrane 50.0 47.38
TraesCS3D01G340400.1 Wheat plasma membrane 50.0 47.28
TraesCS3A01G346700.1 Wheat plasma membrane 49.77 47.06
HORVU3Hr1G045630.2 Barley plastid 50.23 45.8
CDX74504 Canola plasma membrane 32.95 44.0
CDX86347 Canola plasma membrane 45.62 43.04
CDX85291 Canola mitochondrion, peroxisome, plasma membrane 45.62 42.86
CDY45907 Canola plasma membrane 45.16 42.61
CDY35776 Canola plasma membrane 44.7 42.36
CDY67720 Canola plasma membrane 44.01 41.7
CDY00078 Canola plasma membrane 44.01 41.7
CDY37894 Canola plasma membrane 42.63 40.84
CDY17030 Canola plasma membrane 41.01 39.47
CDY47589 Canola plasma membrane 40.78 39.16
CDX67416 Canola plasma membrane 37.56 37.05
CDX79381 Canola plasma membrane 39.17 36.8
CDY49071 Canola plasma membrane 37.1 36.67
CDX67951 Canola plasma membrane 38.71 35.82
CDX87318 Canola plasma membrane 38.71 34.71
CDY39969 Canola plasma membrane 38.48 34.5
CDY37600 Canola cytosol, peroxisome, plasma membrane 37.56 33.82
CDY38675 Canola plasma membrane 37.33 33.61
Zm00001d012485_P001 Maize golgi, plasma membrane, plastid 50.92 33.18
Zm00001d030531_P001 Maize extracellular, plasma membrane, vacuole 13.59 32.07
Protein Annotations
MapMan:24.2.3.4.7GO:A0A078C7L7InterPro:AA/rel_permease1InterPro:AA_transpt_TMEnsemblPlants:CDX72159ProteinID:CDX72159
ProteinID:CDX72159.1GO:GO:0003333GO:GO:0003674GO:GO:0005215GO:GO:0005575GO:GO:0006810
GO:GO:0008150GO:GO:0015171GO:GO:0016020GO:GO:0016021GO:GO:0022857GO:GO:0055085
EnsemblPlantsGene:GSBRNA2T00155984001PFAM:PF01490PIRSF:PIRSF006060PANTHER:PTHR22950PANTHER:PTHR22950:SF323TMHMM:TMhelix
UniParc:UPI0004EB1EEDSEG:seg::::
Description
BnaC08g27150D
Coordinates
chrLK031795:-:2752965..2755177
Molecular Weight (calculated)
46687.0 Da
IEP (calculated)
8.471
GRAVY (calculated)
0.850
Length
434 amino acids
Sequence
(BLAST)
001: MSPPIKSPLL PKQEPSSEKH GSTSGVVFNV STSIIGAGIM SMPAAFKVLG VVPALLIITI IAWLSTISVG FLMKSTLAGE ATTYAGVMKE SFGKAGSVAV
101: QVATMVATFG CMVIFSIIIG DVLSGNDNGG SVHLGVLQEW FGSHWWNTRI FSLLFIYAFV LLPLVLCRRV ERLAFSSAIS FLLAVLFVVI SSVLAISALM
201: EGQTKNPRLF PDLTNGGSFW NLFTASPVIV TAFTFHFNVH PIGFELKDPL HVIPATKISV ILCAAIYFAT GLFGYLLFGD ATMSDILVNF DESSGSSIGS
301: LLNDIVRLSY ALHLMLVFPL MNFSLRANLD ELMFPTMKAP LAKDTKRFVG LTLALLICCF LSAIAVPDIW YFFQFLGSTT TVSIAFIFPA AIVLRNVNGV
401: STSREKIVAA IMLVLAVATS IVAISTNLYS LTSK
Best Arabidopsis Sequence Match ( AT3G56200.1 )
(BLAST)
001: MTPQIKTHLL PKQEPSSSEN HGSSTSGIVF NVSTSIIGAG IMSMPAAFKV LGIVPAFLII TIIAWLSTIS VGFLMKSTLA GESTTYAGVM KESFGKTGSI
101: AVQIATMVAT FGCMIIFSII IGDVLSGNEN GGPEHIGVLQ EWFGSYWWNT RIFALLFVYG FVLLPLVLRR RVERLAISSA VSFLLAVLFV VISSVLAISA
201: LVNGQTKNPR LFPELSNGGS FWQLFTASPV IVTAFTFHFN VHPIGFELKD PLQVIPATKI SVILCAAIYF ATGLFGYLLF GDATMSDILV NFDQSSGSSI
301: GSLLNDIVRL SYVLHLMLVF PLLNFSLRAN LDELLYPKKP SLEKDTKRFI GLTLALLICC FLSAIAVPDI WYFFQFMGST ITVSIAFIFP AAIVLRNIHG
401: VSTSREKIVA AIMLVLAVAT SIIAISTNLY SLAAN
Arabidopsis Description
AVT6CAmino acid transporter AVT6C [Source:UniProtKB/Swiss-Prot;Acc:Q9LYM2]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.