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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane

Predictor Summary:
  • nucleus 1
  • plasma membrane 4
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • golgi 1
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane
Any Predictor:nucleus, plasma membrane
BaCelLo:nucleus
MultiLoc:plasma membrane
PProwler:secretory
WoLF PSORT:plasma membrane
YLoc:plasma membrane
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX67416 Canola plasma membrane 92.26 92.05
CDY17030 Canola plasma membrane 78.82 76.72
CDY47589 Canola plasma membrane 78.59 76.33
CDY37894 Canola plasma membrane 74.94 72.63
CDX74504 Canola plasma membrane 52.39 70.77
AT5G38820.2 Thale cress plasma membrane 71.98 68.55
CDY35776 Canola plasma membrane 66.51 63.76
CDY45907 Canola plasma membrane 66.51 63.48
CDX86347 Canola plasma membrane 66.29 63.26
CDX85291 Canola mitochondrion, peroxisome, plasma membrane 66.51 63.2
CDY00078 Canola plasma membrane 64.46 61.79
CDY67720 Canola plasma membrane 64.24 61.57
HORVU0Hr1G020180.1 Barley cytosol, plasma membrane 23.23 59.65
Solyc02g089400.2.1 Tomato plasma membrane 61.73 58.91
VIT_14s0083g00740.t01 Wine grape plasma membrane 61.28 58.23
PGSC0003DMT400068294 Potato plasma membrane 60.59 57.45
GSMUA_Achr7P20080_001 Banana extracellular, plasma membrane, vacuole 51.94 56.86
Solyc02g065680.2.1 Tomato plasma membrane 59.45 56.37
PGSC0003DMT400003740 Potato plasma membrane 60.82 55.39
KRH45158 Soybean plasma membrane 58.54 55.15
TraesCS7A01G212200.2 Wheat plasma membrane 57.86 55.1
TraesCS7B01G119000.2 Wheat plasma membrane 57.86 55.1
KRG93742 Soybean plasma membrane 58.09 55.08
KRH01440 Soybean plasma membrane 58.31 55.05
TraesCS7D01G213900.1 Wheat plasma membrane 57.63 54.88
HORVU7Hr1G065280.2 Barley plasma membrane 57.63 54.76
EER88229 Sorghum plasma membrane 56.26 53.81
GSMUA_Achr8P24480_001 Banana cytosol, golgi, plasma membrane 56.49 53.56
Zm00001d015658_P001 Maize plasma membrane 54.9 53.44
Os06t0275800-01 Rice plasma membrane 54.44 53.35
Os06t0633800-01 Rice peroxisome 55.58 53.28
TraesCS7A01G391600.1 Wheat plasma membrane 55.35 53.06
TraesCS7B01G293500.3 Wheat plasma membrane 55.13 52.84
TraesCS7D01G387200.1 Wheat plasma membrane 55.13 52.84
KXG29680 Sorghum plasma membrane 54.67 52.75
EER88687 Sorghum cytosol, peroxisome, plasma membrane 54.9 52.51
TraesCS6D01G270800.1 Wheat plasma membrane 53.08 52.36
TraesCS6B01G317700.1 Wheat plasma membrane 52.85 52.13
HORVU6Hr1G072350.1 Barley plasma membrane 53.08 52.01
TraesCS6A01G288200.1 Wheat plasma membrane 53.08 52.01
Os02t0727100-01 Rice plasma membrane 52.85 51.79
KRG93745 Soybean plasma membrane 54.21 51.29
KRH18319 Soybean plasma membrane 54.21 51.18
TraesCS6A01G170700.1 Wheat plasma membrane 53.3 51.09
Zm00001d046661_P003 Maize golgi, peroxisome, plasma membrane 55.13 50.95
TraesCS6B01G198900.1 Wheat peroxisome 53.08 50.87
TraesCS6D01G160400.1 Wheat peroxisome 53.08 50.87
HORVU6Hr1G034900.1 Barley peroxisome 53.08 50.76
Os02t0191300-01 Rice cytosol, peroxisome, plasma membrane 52.85 50.54
Zm00001d051703_P001 Maize plasma membrane 51.94 46.72
HORVU7Hr1G092550.1 Barley cytosol 55.13 46.72
Zm00001d045740_P001 Maize plasma membrane 57.18 43.35
KXG30838 Sorghum plasma membrane 52.62 41.7
CDY27235 Canola plasma membrane 35.08 37.93
CDY27236 Canola plasma membrane 36.9 37.33
CDX72159 Canola plasma membrane 36.67 37.1
CDX79381 Canola plasma membrane 38.27 36.36
CDX67951 Canola plasma membrane 38.5 36.03
CDY27234 Canola plasma membrane 36.67 35.46
CDY52929 Canola plastid 35.76 35.28
CDX87318 Canola plasma membrane 38.5 34.92
CDY39969 Canola plasma membrane 38.27 34.71
CDY66186 Canola plasma membrane, plastid 35.54 34.29
CDY37600 Canola cytosol, peroxisome, plasma membrane 37.36 34.02
HORVU0Hr1G020160.1 Barley golgi, mitochondrion 22.55 34.02
CDY38675 Canola plasma membrane 37.13 33.82
Protein Annotations
EnsemblPlants:CDY49071EnsemblPlantsGene:GSBRNA2T00092292001GO:A0A078IGF5GO:GO:0005575GO:GO:0016020GO:GO:0016021
InterPro:AA_transpt_TMPANTHER:PTHR22950PANTHER:PTHR22950:SF292PFAM:PF01490ProteinID:CDY49071ProteinID:CDY49071.1
TMHMM:TMhelixUniParc:UPI0004EF1343UniProt:A0A078IGF5MapMan:24.2.3.4.7::
Description
BnaC06g12470DBnaC06g12470D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IGF5]
Coordinates
chrLK032809:-:6694..8316
Molecular Weight (calculated)
48094.7 Da
IEP (calculated)
7.998
GRAVY (calculated)
0.680
Length
439 amino acids
Sequence
(BLAST)
001: MAPEDEEVHN DLTEQLVKTS ESDEHAEFKG ASFNGAVLNL ATTIIGAGIM ALPATMKILG LVPGIVMIVL MAFLTEKTIE ILLRFSGIGN ARSYGALMQD
101: SFGRPGRIVL QVAVLVSNIG VLIVYMIIIG DVFEDMLEER LGKTWWDQRT IVLLFTTCVF APFTAFKQID DLRFASATSL ALAVLFLVIT GAIVVTKFFS
201: GGLMKPKLLP SFTDLSSVLK LFTVVPVLVN AFICHSNVHS IQNELQDSTR IKPVVRSALI MSSSVYIVTS LFGYLLFGES TRDDVLKNFD THLKIPYGLV
301: ISDAVRVSYA AHLMLVFPII FYPLRVNVDG LFFPTAPSLT TSNLRFRSIT AGLIAVIFVG ANFIPSIWDA FQLIGATASV CIGFIFPAAV ILKDRHNRAT
401: KMDKTIAIFV IVLAVFSNAI AMYSDVCALL KKHKSTFPM
Best Arabidopsis Sequence Match ( AT3G30390.1 )
(BLAST)
001: MTVVGDVAPI PRRNSSTCSN DIAAPLLPEC HGDEVAHDEF NGASFSGAVF NLATTIIGAG IMALPATMKI LGLGLGITMI VVMAFLTDAS IEFLLRFSKA
101: GKNRSYGGLM GGSFGNPGRI LLQVAVLVNN IGVLIVYMII IGDVLAGKTE DGIHHFGVLE GWFGHHWWNG RAAILLITTL GVFAPLACFK RIDSLKFTSA
201: LSVALAVVFL IITAGISIMK LISGGVAMPR LLPDVTDLTS FWNLFTVVPV LVTAFICHYN VHSIQNELED PSQIRPVVRS ALMLCSSVYI MTSIFGFLLF
301: GDDTLDDVLA NFDTDLGIPF GSILNDAVRV SYALHLMLVF PIVFYPLRIN IDGLLFPSAR SLSTSNVRFG CLTAGLISVI FLGANFIPSI WDAFQFTGAT
401: AAVCLGFIFP ASIILKDRHD KATNRDTTLA IFMIVLAVLS NAIAIYSDAY ALFKKNAPRE
Arabidopsis Description
AVT6AAmino acid transporter AVT6A [Source:UniProtKB/Swiss-Prot;Acc:Q9LI61]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.