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Rice
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Rice
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane

Predictor Summary:
  • nucleus 1
  • cytosol 1
  • golgi 2
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • plasma membrane 3
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane
Any Predictor:cytosol, nucleus, secretory
BaCelLo:nucleus
MultiLoc:cytosol
Plant-mPloc:golgi
PProwler:secretory
WoLF PSORT:plasma membrane
YLoc:plasma membrane
 plasma membrane: 27800704
msms PMID: 27800704 doi
J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu
Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
HORVU0Hr1G020180.1 Barley cytosol, plasma membrane 33.26 87.13
TraesCS7A01G212200.2 Wheat plasma membrane 89.51 86.98
TraesCS7D01G213900.1 Wheat plasma membrane 89.29 86.77
TraesCS7B01G119000.2 Wheat plasma membrane 89.06 86.55
HORVU7Hr1G065280.2 Barley plasma membrane 88.62 85.93
EER88229 Sorghum plasma membrane 85.94 83.88
GSMUA_Achr7P20080_001 Banana extracellular, plasma membrane, vacuole 66.74 74.56
Os02t0727100-01 Rice plasma membrane 71.65 71.65
GSMUA_Achr8P24480_001 Banana cytosol, golgi, plasma membrane 73.88 71.49
VIT_14s0083g00740.t01 Wine grape plasma membrane 68.08 66.02
Solyc02g089400.2.1 Tomato plasma membrane 67.63 65.87
Zm00001d045740_P001 Maize plasma membrane 85.04 65.8
Os02t0191300-01 Rice cytosol, peroxisome, plasma membrane 66.07 64.49
Os06t0633800-01 Rice peroxisome 65.62 64.19
Solyc02g065680.2.1 Tomato plasma membrane 65.85 63.71
PGSC0003DMT400068294 Potato plasma membrane 65.85 63.71
AT3G30390.2 Thale cress plasma membrane 64.29 62.61
CDY35776 Canola plasma membrane 63.84 62.45
CDX86347 Canola plasma membrane 63.84 62.17
CDX74504 Canola plasma membrane 45.09 62.15
CDY45907 Canola plasma membrane 63.62 61.96
Bra025416.1-P Field mustard mitochondrion, peroxisome, plasma membrane 63.62 61.96
Bra020737.1-P Field mustard plasma membrane 63.39 61.87
CDX85291 Canola mitochondrion, peroxisome, plasma membrane 63.62 61.69
Bra036198.1-P Field mustard plasma membrane 62.72 61.62
KRH45158 Soybean plasma membrane 64.06 61.59
KRH01440 Soybean plasma membrane 63.84 61.51
CDY67720 Canola plasma membrane 62.72 61.35
PGSC0003DMT400003740 Potato plasma membrane 65.85 61.2
CDY00078 Canola plasma membrane 62.5 61.14
KRG93742 Soybean plasma membrane 62.95 60.91
AT5G38820.2 Thale cress plasma membrane 62.5 60.74
CDY37894 Canola plasma membrane 61.16 60.49
KRH18319 Soybean plasma membrane 60.49 58.28
KRG93745 Soybean plasma membrane 60.04 57.97
KRH54971 Soybean plasma membrane 60.71 57.87
Bra014071.1-P Field mustard plasma membrane 56.92 57.05
HORVU0Hr1G020160.1 Barley golgi, mitochondrion 36.38 56.01
CDY17030 Canola plasma membrane 56.03 55.65
CDY47589 Canola plasma membrane 55.58 55.09
CDX67416 Canola plasma membrane 53.79 54.77
CDY49071 Canola plasma membrane 53.35 54.44
Bra028420.1-P Field mustard plasma membrane 52.9 53.86
Os01t0825800-01 Rice plasma membrane 47.99 47.15
Os06t0644700-01 Rice cytosol, peroxisome, plasma membrane 43.08 40.46
Protein Annotations
MapMan:24.2.3.4.7EntrezGene:4340751InterPro:AA_transpt_TMEMBL:AK066102EMBL:AK120497ProteinID:BAB19353.1
ProteinID:BAF19296.1ProteinID:BAS97231.1GO:GO:0003333GO:GO:0003674GO:GO:0005215GO:GO:0005575
GO:GO:0006810GO:GO:0008150GO:GO:0015171GO:GO:0016020GO:GO:0016021EnsemblPlantsGene:Os06g0275800
EnsemblPlants:Os06t0275800-01PFAM:PF01490PANTHER:PTHR22950PANTHER:PTHR22950:SF270UniProt:Q9FNZ8TMHMM:TMhelix
UniParc:UPI00000AA15BRefSeq:XP_015644413.1SEG:seg:::
Description
neutral amino acid transporter, amino acid transporter-like 4Amino acid transporter, transmembrane domain containing protein. (Os06t0275800-01);Amino acid transporter, transmembrane domain containing protein. (Os06t0275800-02);Amino acid transporter, transmembrane domain containing protein. (Os06t0275800-03)
Coordinates
chr6:+:9396137..9399067
Molecular Weight (calculated)
48124.4 Da
IEP (calculated)
7.304
GRAVY (calculated)
0.724
Length
448 amino acids
Sequence
(BLAST)
001: MGGGVTERLP EGSSEPLLPT KREGGGGGGE FAGAVFNLST TIVGAGIMAL PATMKVLGLA PGLVAILLAA LLTDASIELL VRSSRAAGAP SYGAVMGDAF
101: GWWGRRLLQV CVVVNNIGVM IVYMIIIGDV LSGTSSGGEH HYGVLEGWFG PQWWNGRFFV LLVTTLVVFT PLACLKRVDS LSYTSAISVA LAVVFVIITA
201: GIAIVKLIKG QIPMPKLFPD VPDLASIWEL FTAVPVLVTA YVCHYNVHPI HNELKDPSQI KPIVHTSLVL CSTVYITTSF FGYLLFGEST LSDVLANFDS
301: NLGIPYSQML NDAVRVSYAV HLMLVFPMIF HALRLNLDGL LFSSSSPLSS DNRRFSVMTA VLLLVIFLSA NFIPSIWDAF QFTGATAAVC IAFIFPAAIT
401: LRDPHSIAKK WDKILSIFMI VLAIVSNVVA VYSDAYSMFH RKSSPSIA
Best Arabidopsis Sequence Match ( AT3G30390.1 )
(BLAST)
001: MTVVGDVAPI PRRNSSTCSN DIAAPLLPEC HGDEVAHDEF NGASFSGAVF NLATTIIGAG IMALPATMKI LGLGLGITMI VVMAFLTDAS IEFLLRFSKA
101: GKNRSYGGLM GGSFGNPGRI LLQVAVLVNN IGVLIVYMII IGDVLAGKTE DGIHHFGVLE GWFGHHWWNG RAAILLITTL GVFAPLACFK RIDSLKFTSA
201: LSVALAVVFL IITAGISIMK LISGGVAMPR LLPDVTDLTS FWNLFTVVPV LVTAFICHYN VHSIQNELED PSQIRPVVRS ALMLCSSVYI MTSIFGFLLF
301: GDDTLDDVLA NFDTDLGIPF GSILNDAVRV SYALHLMLVF PIVFYPLRIN IDGLLFPSAR SLSTSNVRFG CLTAGLISVI FLGANFIPSI WDAFQFTGAT
401: AAVCLGFIFP ASIILKDRHD KATNRDTTLA IFMIVLAVLS NAIAIYSDAY ALFKKNAPRE
Arabidopsis Description
AVT6AAmino acid transporter AVT6A [Source:UniProtKB/Swiss-Prot;Acc:Q9LI61]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.