Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 1
- plasma membrane 5
- golgi 2
- endoplasmic reticulum 1
- vacuole 1
- extracellular 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra025416.1-P | Field mustard | mitochondrion, peroxisome, plasma membrane | 91.74 | 91.74 |
| CDX86347 | Canola | plasma membrane | 91.52 | 91.52 |
| CDX85291 | Canola | mitochondrion, peroxisome, plasma membrane | 91.3 | 90.91 |
| CDY67720 | Canola | plasma membrane | 88.7 | 89.08 |
| Bra036198.1-P | Field mustard | plasma membrane | 88.04 | 88.82 |
| CDY00078 | Canola | plasma membrane | 88.26 | 88.65 |
| CDY35776 | Canola | plasma membrane | 88.26 | 88.65 |
| CDY45907 | Canola | plasma membrane | 87.83 | 87.83 |
| Bra020737.1-P | Field mustard | plasma membrane | 87.39 | 87.58 |
| AT5G38820.2 | Thale cress | plasma membrane | 75.43 | 75.27 |
| VIT_14s0083g00740.t01 | Wine grape | plasma membrane | 72.83 | 72.51 |
| Solyc02g089400.2.1 | Tomato | plasma membrane | 72.39 | 72.39 |
| PGSC0003DMT400068294 | Potato | plasma membrane | 70.43 | 69.98 |
| Solyc02g065680.2.1 | Tomato | plasma membrane | 69.13 | 68.68 |
| GSMUA_Achr7P20080_001 | Banana | extracellular, plasma membrane, vacuole | 59.78 | 68.58 |
| PGSC0003DMT400003740 | Potato | plasma membrane | 71.09 | 67.84 |
| GSMUA_Achr8P24480_001 | Banana | cytosol, golgi, plasma membrane | 68.04 | 67.6 |
| KRH01440 | Soybean | plasma membrane | 68.26 | 67.53 |
| KRH45158 | Soybean | plasma membrane | 68.26 | 67.38 |
| KRG93742 | Soybean | plasma membrane | 66.3 | 65.87 |
| HORVU6Hr1G072350.1 | Barley | plasma membrane | 63.26 | 64.96 |
| HORVU0Hr1G020180.1 | Barley | cytosol, plasma membrane | 24.13 | 64.91 |
| TraesCS7A01G212200.2 | Wheat | plasma membrane | 65.0 | 64.86 |
| TraesCS6A01G288200.1 | Wheat | plasma membrane | 63.04 | 64.73 |
| HORVU7Hr1G065280.2 | Barley | plasma membrane | 65.0 | 64.72 |
| TraesCS7B01G119000.2 | Wheat | plasma membrane | 64.78 | 64.64 |
| TraesCS7D01G213900.1 | Wheat | plasma membrane | 64.78 | 64.64 |
| TraesCS6B01G317700.1 | Wheat | plasma membrane | 62.39 | 64.49 |
| TraesCS6D01G270800.1 | Wheat | plasma membrane | 62.39 | 64.49 |
| Os06t0275800-01 | Rice | plasma membrane | 62.61 | 64.29 |
| Os02t0727100-01 | Rice | plasma membrane | 62.39 | 64.06 |
| EER88229 | Sorghum | plasma membrane | 63.48 | 63.62 |
| TraesCS7D01G387200.1 | Wheat | plasma membrane | 63.04 | 63.32 |
| TraesCS7A01G391600.1 | Wheat | plasma membrane | 62.83 | 63.1 |
| TraesCS7B01G293500.3 | Wheat | plasma membrane | 62.83 | 63.1 |
| Os06t0633800-01 | Rice | peroxisome | 62.61 | 62.88 |
| EER88687 | Sorghum | cytosol, peroxisome, plasma membrane | 62.39 | 62.53 |
| Zm00001d015658_P001 | Maize | plasma membrane | 60.87 | 62.08 |
| TraesCS6A01G170700.1 | Wheat | plasma membrane | 61.3 | 61.57 |
| TraesCS6B01G198900.1 | Wheat | peroxisome | 61.3 | 61.57 |
| KXG29680 | Sorghum | plasma membrane | 60.87 | 61.54 |
| HORVU6Hr1G034900.1 | Barley | peroxisome | 61.3 | 61.44 |
| TraesCS6D01G160400.1 | Wheat | peroxisome | 61.09 | 61.35 |
| KRH18319 | Soybean | plasma membrane | 61.74 | 61.08 |
| Os02t0191300-01 | Rice | cytosol, peroxisome, plasma membrane | 60.43 | 60.57 |
| KRG93745 | Soybean | plasma membrane | 61.09 | 60.56 |
| Zm00001d046661_P003 | Maize | golgi, peroxisome, plasma membrane | 62.39 | 60.42 |
| Zm00001d051703_P001 | Maize | plasma membrane | 63.48 | 59.84 |
| HORVU7Hr1G092550.1 | Barley | cytosol | 61.52 | 54.63 |
| KXG30838 | Sorghum | plasma membrane | 63.04 | 52.35 |
| Zm00001d045740_P001 | Maize | plasma membrane | 63.48 | 50.43 |
| AT3G56200.1 | Thale cress | plasma membrane | 41.96 | 44.37 |
| AT2G40420.1 | Thale cress | plastid | 42.17 | 44.09 |
| HORVU0Hr1G020160.1 | Barley | golgi, mitochondrion | 26.74 | 42.27 |
| AT1G80510.1 | Thale cress | cytosol, peroxisome, plasma membrane | 41.74 | 39.26 |
Protein Annotations
| MapMan:24.2.3.4.7 | EntrezGene:822740 | InterPro:AA_transpt_TM | ProteinID:AEE77639.1 | ProteinID:AEE77640.1 | EMBL:AF428287 |
| EMBL:AK317437 | ProteinID:ANM65075.1 | ArrayExpress:AT3G30390 | EnsemblPlantsGene:AT3G30390 | RefSeq:AT3G30390 | TAIR:AT3G30390 |
| RefSeq:AT3G30390-TAIR-G | EnsemblPlants:AT3G30390.2 | TAIR:AT3G30390.2 | EMBL:AY052201 | Unigene:At.21575 | ProteinID:BAB02239.1 |
| GO:GO:0003333 | GO:GO:0003674 | GO:GO:0005215 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005773 | GO:GO:0005774 | GO:GO:0006810 | GO:GO:0006865 | GO:GO:0008150 |
| GO:GO:0015171 | GO:GO:0016020 | GO:GO:0016021 | RefSeq:NP_001030795.1 | RefSeq:NP_001319669.1 | RefSeq:NP_566854.1 |
| PFAM:PF01490 | PO:PO:0000005 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000230 |
| PO:PO:0000293 | PO:PO:0001016 | PO:PO:0001017 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 |
| PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 |
| PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 |
| PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 |
| PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 |
| PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025195 | PO:PO:0025281 |
| PANTHER:PTHR22950 | PANTHER:PTHR22950:SF270 | UniProt:Q9LI61 | TMHMM:TMhelix | UniParc:UPI00000487B1 | SEG:seg |
Description
AVT6AAmino acid transporter AVT6A [Source:UniProtKB/Swiss-Prot;Acc:Q9LI61]
Coordinates
chr3:-:11976837..11979646
Molecular Weight (calculated)
49520.1 Da
IEP (calculated)
6.503
GRAVY (calculated)
0.729
Length
460 amino acids
Sequence
(BLAST)
(BLAST)
001: MTVVGDVAPI PRRNSSTCSN DIAAPLLPEC HGDEVAHDEF NGASFSGAVF NLATTIIGAG IMALPATMKI LGLGLGITMI VVMAFLTDAS IEFLLRFSKA
101: GKNRSYGGLM GGSFGNPGRI LLQVAVLVNN IGVLIVYMII IGDVLAGKTE DGIHHFGVLE GWFGHHWWNG RAAILLITTL GVFAPLACFK RIDSLKFTSA
201: LSVALAVVFL IITAGISIMK LISGGVAMPR LLPDVTDLTS FWNLFTVVPV LVTAFICHYN VHSIQNELED PSQIRPVVRS ALMLCSSVYI MTSIFGFLLF
301: GDDTLDDVLA NFDTDLGIPF GSILNDAVRV SYALHLMLVF PIVFYPLRIN IDGLLFPSAR SLSTSNVRFG CLTAGLISVI FLGANFIPSI WDAFQFTGAT
401: AAVCLGFIFP ASIILKDRHD KATNRDTTLA IFMIVLAVLS NAIAIYSDAY ALFKKNAPRE
101: GKNRSYGGLM GGSFGNPGRI LLQVAVLVNN IGVLIVYMII IGDVLAGKTE DGIHHFGVLE GWFGHHWWNG RAAILLITTL GVFAPLACFK RIDSLKFTSA
201: LSVALAVVFL IITAGISIMK LISGGVAMPR LLPDVTDLTS FWNLFTVVPV LVTAFICHYN VHSIQNELED PSQIRPVVRS ALMLCSSVYI MTSIFGFLLF
301: GDDTLDDVLA NFDTDLGIPF GSILNDAVRV SYALHLMLVF PIVFYPLRIN IDGLLFPSAR SLSTSNVRFG CLTAGLISVI FLGANFIPSI WDAFQFTGAT
401: AAVCLGFIFP ASIILKDRHD KATNRDTTLA IFMIVLAVLS NAIAIYSDAY ALFKKNAPRE
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.