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Sorghum
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Sorghum
Subcellular Localization
min:
: max

 
Winner_takes_all: peroxisome, cytosol, plasma membrane

Predictor Summary:
  • nucleus 1
  • plasma membrane 3
  • golgi 2
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • cytosol 1
  • peroxisome 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, peroxisome, plasma membrane
Any Predictor:cytosol, nucleus, peroxisome, secretory
BaCelLo:nucleus
MultiLoc:plasma membrane
Plant-mPloc:golgi, plasma membrane
PProwler:secretory
WoLF PSORT:cytosol
YLoc:peroxisome
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Zm00001d046661_P003 Maize golgi, peroxisome, plasma membrane 98.47 95.16
Os06t0633800-01 Rice peroxisome 93.46 93.67
TraesCS7B01G293500.3 Wheat plasma membrane 88.89 89.08
TraesCS7A01G391600.1 Wheat plasma membrane 88.89 89.08
TraesCS7D01G387200.1 Wheat plasma membrane 88.67 88.86
KXG29680 Sorghum plasma membrane 82.79 83.52
HORVU7Hr1G092550.1 Barley cytosol 88.67 78.57
EER88229 Sorghum plasma membrane 66.23 66.23
VIT_14s0083g00740.t01 Wine grape plasma membrane 66.01 65.58
Solyc02g089400.2.1 Tomato plasma membrane 64.71 64.57
PGSC0003DMT400068294 Potato plasma membrane 64.71 64.15
KRH01440 Soybean plasma membrane 64.49 63.66
Solyc02g065680.2.1 Tomato plasma membrane 64.05 63.5
CDY35776 Canola plasma membrane 62.96 63.1
CDX74504 Canola plasma membrane 44.66 63.08
CDY45907 Canola plasma membrane 62.96 62.83
Bra020737.1-P Field mustard plasma membrane 62.75 62.75
KRH45158 Soybean plasma membrane 63.4 62.45
AT3G30390.2 Thale cress plasma membrane 62.53 62.39
CDY37894 Canola plasma membrane 61.44 62.25
CDX86347 Canola plasma membrane 62.09 61.96
Bra025416.1-P Field mustard mitochondrion, peroxisome, plasma membrane 62.09 61.96
CDX85291 Canola mitochondrion, peroxisome, plasma membrane 62.09 61.69
AT5G38820.2 Thale cress plasma membrane 61.44 61.17
KRG93742 Soybean plasma membrane 61.44 60.91
CDY00078 Canola plasma membrane 60.57 60.7
Bra036198.1-P Field mustard plasma membrane 59.91 60.31
CDY67720 Canola plasma membrane 60.13 60.26
PGSC0003DMT400003740 Potato plasma membrane 63.18 60.17
KRH18319 Soybean plasma membrane 60.13 59.35
KRG93745 Soybean plasma membrane 59.7 59.05
Bra014071.1-P Field mustard plasma membrane 56.43 57.94
CDY17030 Canola plasma membrane 56.43 57.43
CDY47589 Canola plasma membrane 55.34 56.19
KRH54971 Soybean plasma membrane 56.43 55.11
CDY49071 Canola plasma membrane 52.51 54.9
CDX67416 Canola plasma membrane 51.63 53.86
Bra028420.1-P Field mustard plasma membrane 51.42 53.64
KXG30838 Sorghum plasma membrane 61.66 51.08
KXG33635 Sorghum plasma membrane 44.66 44.09
EER90107 Sorghum cytosol, peroxisome, plastid, vacuole 37.04 35.12
Protein Annotations
MapMan:24.2.3.4.7EntrezGene:8067680InterPro:AA_transpt_TMUniProt:C5Z6A3EnsemblPlants:EER88687ProteinID:EER88687
ProteinID:EER88687.1GO:GO:0003333GO:GO:0003674GO:GO:0005215GO:GO:0005575GO:GO:0006810
GO:GO:0008150GO:GO:0015171GO:GO:0016020GO:GO:0016021PFAM:PF01490PANTHER:PTHR22950
PANTHER:PTHR22950:SF292EnsemblPlantsGene:SORBI_3010G199200unigene:Sbi.6695TMHMM:TMhelixUniParc:UPI0001A894DFRefSeq:XP_002437320.1
SEG:seg:::::
Description
hypothetical protein
Coordinates
chr10:+:54233583..54235989
Molecular Weight (calculated)
49967.7 Da
IEP (calculated)
6.511
GRAVY (calculated)
0.731
Length
459 amino acids
Sequence
(BLAST)
001: MGIGDGSSNG NQQLVHKEIR DETTPLLPVK VEEDEGFHEF NGASFSGAVF NLSTTIVGAG IMALPASIKM LGIIPGILLI IIVALLTEAS IDMLVRCSHQ
101: GKITSYGWLM GEVFGQWGRI ALQGSVIINN VGVLIVYMII IGDVLSGTTS GDVHHRGILE GWFGAHLWNS RSIVLLATAL LVFAPLVSFK RLDSLRYTSA
201: LSVALAVVFV VITAGIAIIK LFNGTVAMPK LFPELDGLNS IWNLFTAVPV LVTAYICHYN VHSIDNELED RTQIKPIVRT SLFLCSSVYI ATSFFAYLLF
301: GEGTLDDVLA NFDANLGIPF SSVFDDIVRV SYAAHVMLVF PIVFFALRLN LDGLLFPTSR HISRDNKRFA IITISLLTVI YLAAILIPSI WDAFQFTGAT
401: AAVLIGFIFP AMVILRDSYG IATKRDKILA VTMIVLAVLS NSVALYSDAM NIFRKKEVA
Best Arabidopsis Sequence Match ( AT3G30390.1 )
(BLAST)
001: MTVVGDVAPI PRRNSSTCSN DIAAPLLPEC HGDEVAHDEF NGASFSGAVF NLATTIIGAG IMALPATMKI LGLGLGITMI VVMAFLTDAS IEFLLRFSKA
101: GKNRSYGGLM GGSFGNPGRI LLQVAVLVNN IGVLIVYMII IGDVLAGKTE DGIHHFGVLE GWFGHHWWNG RAAILLITTL GVFAPLACFK RIDSLKFTSA
201: LSVALAVVFL IITAGISIMK LISGGVAMPR LLPDVTDLTS FWNLFTVVPV LVTAFICHYN VHSIQNELED PSQIRPVVRS ALMLCSSVYI MTSIFGFLLF
301: GDDTLDDVLA NFDTDLGIPF GSILNDAVRV SYALHLMLVF PIVFYPLRIN IDGLLFPSAR SLSTSNVRFG CLTAGLISVI FLGANFIPSI WDAFQFTGAT
401: AAVCLGFIFP ASIILKDRHD KATNRDTTLA IFMIVLAVLS NAIAIYSDAY ALFKKNAPRE
Arabidopsis Description
AVT6AAmino acid transporter AVT6A [Source:UniProtKB/Swiss-Prot;Acc:Q9LI61]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.