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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane

Predictor Summary:
  • nucleus 1
  • plasma membrane 4
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • golgi 1
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane
Any Predictor:nucleus, plasma membrane
BaCelLo:nucleus
MultiLoc:plasma membrane
PProwler:secretory
WoLF PSORT:plasma membrane
YLoc:plasma membrane
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra014071.1-P Field mustard plasma membrane 94.25 95.3
CDY17030 Canola plasma membrane 91.59 91.8
CDX67416 Canola plasma membrane 76.99 79.09
CDY37894 Canola plasma membrane 79.2 79.03
CDY49071 Canola plasma membrane 76.33 78.59
CDX74504 Canola plasma membrane 55.53 77.23
AT5G38820.2 Thale cress plasma membrane 73.45 72.02
CDY35776 Canola plasma membrane 67.04 66.16
CDX86347 Canola plasma membrane 67.04 65.87
CDX85291 Canola mitochondrion, peroxisome, plasma membrane 67.26 65.8
CDY45907 Canola plasma membrane 66.81 65.65
CDY00078 Canola plasma membrane 65.49 64.63
CDY67720 Canola plasma membrane 65.04 64.19
VIT_14s0083g00740.t01 Wine grape plasma membrane 63.27 61.9
Solyc02g089400.2.1 Tomato plasma membrane 62.17 61.09
KRH01440 Soybean plasma membrane 62.61 60.86
HORVU0Hr1G020180.1 Barley cytosol, plasma membrane 23.01 60.82
KRH45158 Soybean plasma membrane 62.61 60.73
PGSC0003DMT400068294 Potato plasma membrane 62.17 60.69
GSMUA_Achr7P20080_001 Banana extracellular, plasma membrane, vacuole 53.54 60.35
KRG93742 Soybean plasma membrane 61.5 60.04
Solyc02g065680.2.1 Tomato plasma membrane 61.28 59.83
TraesCS7B01G119000.2 Wheat plasma membrane 59.29 58.13
HORVU7Hr1G065280.2 Barley plasma membrane 59.29 58.01
TraesCS7D01G213900.1 Wheat plasma membrane 59.07 57.92
TraesCS7A01G212200.2 Wheat plasma membrane 59.07 57.92
GSMUA_Achr8P24480_001 Banana cytosol, golgi, plasma membrane 58.85 57.45
PGSC0003DMT400003740 Potato plasma membrane 60.84 57.05
Zm00001d015658_P001 Maize plasma membrane 56.19 56.32
EER88229 Sorghum plasma membrane 57.08 56.21
KXG29680 Sorghum plasma membrane 56.42 56.04
Os06t0633800-01 Rice peroxisome 56.64 55.9
TraesCS7B01G293500.3 Wheat plasma membrane 56.42 55.68
TraesCS7A01G391600.1 Wheat plasma membrane 56.42 55.68
TraesCS7D01G387200.1 Wheat plasma membrane 56.42 55.68
Os06t0275800-01 Rice plasma membrane 55.09 55.58
Os02t0727100-01 Rice plasma membrane 55.09 55.58
HORVU6Hr1G072350.1 Barley plasma membrane 54.87 55.36
EER88687 Sorghum cytosol, peroxisome, plasma membrane 56.19 55.34
TraesCS6B01G317700.1 Wheat plasma membrane 54.42 55.28
TraesCS6D01G270800.1 Wheat plasma membrane 54.42 55.28
TraesCS6A01G170700.1 Wheat plasma membrane 55.97 55.24
TraesCS6A01G288200.1 Wheat plasma membrane 54.65 55.13
KRG93745 Soybean plasma membrane 56.19 54.74
KRH18319 Soybean plasma membrane 56.19 54.62
TraesCS6D01G160400.1 Wheat peroxisome 55.31 54.59
TraesCS6B01G198900.1 Wheat peroxisome 55.31 54.59
HORVU6Hr1G034900.1 Barley peroxisome 55.31 54.47
Zm00001d046661_P003 Maize golgi, peroxisome, plasma membrane 56.42 53.68
Os02t0191300-01 Rice cytosol, peroxisome, plasma membrane 54.42 53.59
Zm00001d051703_P001 Maize plasma membrane 55.09 51.02
HORVU7Hr1G092550.1 Barley cytosol 55.75 48.65
Zm00001d045740_P001 Maize plasma membrane 57.96 45.25
KXG30838 Sorghum plasma membrane 53.98 44.04
CDY27236 Canola plasma membrane 39.82 41.47
CDY27235 Canola plasma membrane 36.73 40.89
CDX72159 Canola plasma membrane 39.16 40.78
CDY27234 Canola plasma membrane 39.6 39.43
HORVU0Hr1G020160.1 Barley golgi, mitochondrion 24.78 38.49
CDY52929 Canola plastid 37.83 38.43
CDX79381 Canola plasma membrane 38.72 37.88
CDY66186 Canola plasma membrane, plastid 37.83 37.58
CDX67951 Canola plasma membrane 38.72 37.31
CDY39969 Canola plasma membrane 38.94 36.36
CDX87318 Canola plasma membrane 38.72 36.16
CDY37600 Canola cytosol, peroxisome, plasma membrane 38.27 35.89
CDY38675 Canola plasma membrane 38.27 35.89
Protein Annotations
EnsemblPlants:CDY47589EnsemblPlantsGene:GSBRNA2T00087697001GO:A0A078IDZ1GO:GO:0005575GO:GO:0016020GO:GO:0016021
InterPro:AA_transpt_TMPANTHER:PTHR22950PANTHER:PTHR22950:SF292PFAM:PF01490ProteinID:CDY47589ProteinID:CDY47589.1
SEG:segTMHMM:TMhelixUniParc:UPI0004EE924DUniProt:A0A078IDZ1MapMan:24.2.3.4.7:
Description
BnaC08g04590DBnaC08g04590D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IDZ1]
Coordinates
chrLK032724:+:10034..11733
Molecular Weight (calculated)
49170.9 Da
IEP (calculated)
7.030
GRAVY (calculated)
0.678
Length
452 amino acids
Sequence
(BLAST)
001: MSSYTIKETM ATQDEVQNDP LLQASESDGH EEFNGASFTG AVLNLATAII GAGIMALPAT MKILGLVPGI VMILLMAFLT DKTIEFLLSF SGVGNARRSY
101: GGLMEDSFGK TGRIVLQVAV LVTNVGVLIV YMIIIGDVLE GMLEGWFGES WWDKRTIVLL FTTLCAFAPL TSFKRIDTLR FTSALSLVLA VVFLVITAGI
201: VVTKFYRGGL MKPRLFPNVT DLSSVWKLFT VVPVLVNAYI CHSNVHNIQN ELEDSIQMKP VVRSALVMSS SVYVMTSLFG YLLFGESTLD DVLANFDTDL
301: KIPFGPVLSD AVRLSYAGHL MLVFPVIFYP LRVNMDGLLF PTATPSLTTS NLRFGSITAA LVAVIFVGAN FIPSMWDAFQ LTGATTSVCI GFIFPAAVIL
401: KGRHNRATKM DKTVAIFVIV LAVFSSAIAL YSDAYALVKK NKSTFIGDIR CL
Best Arabidopsis Sequence Match ( AT3G30390.1 )
(BLAST)
001: MTVVGDVAPI PRRNSSTCSN DIAAPLLPEC HGDEVAHDEF NGASFSGAVF NLATTIIGAG IMALPATMKI LGLGLGITMI VVMAFLTDAS IEFLLRFSKA
101: GKNRSYGGLM GGSFGNPGRI LLQVAVLVNN IGVLIVYMII IGDVLAGKTE DGIHHFGVLE GWFGHHWWNG RAAILLITTL GVFAPLACFK RIDSLKFTSA
201: LSVALAVVFL IITAGISIMK LISGGVAMPR LLPDVTDLTS FWNLFTVVPV LVTAFICHYN VHSIQNELED PSQIRPVVRS ALMLCSSVYI MTSIFGFLLF
301: GDDTLDDVLA NFDTDLGIPF GSILNDAVRV SYALHLMLVF PIVFYPLRIN IDGLLFPSAR SLSTSNVRFG CLTAGLISVI FLGANFIPSI WDAFQFTGAT
401: AAVCLGFIFP ASIILKDRHD KATNRDTTLA IFMIVLAVLS NAIAIYSDAY ALFKKNAPRE
Arabidopsis Description
AVT6AAmino acid transporter AVT6A [Source:UniProtKB/Swiss-Prot;Acc:Q9LI61]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.