CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
plasma membrane 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
golgi 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	nucleus, peroxisome, plasma membrane
BaCelLo:	nucleus
MultiLoc:	plasma membrane
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY37600	Canola	cytosol, peroxisome, plasma membrane	98.96	98.96
Bra008469.1-P	Field mustard	plasma membrane	98.55	98.55
CDY39969	Canola	plasma membrane	89.21	88.84
AT1G80510.1	Thale cress	cytosol, peroxisome, plasma membrane	89.83	88.55
CDX87318	Canola	plasma membrane	88.8	88.43
CDX79381	Canola	plasma membrane	83.82	87.45
CDX67951	Canola	plasma membrane	84.23	86.57
KRH09698	Soybean	plasma membrane	67.43	77.57
Solyc03g117350.1.1	Tomato	plasma membrane	71.58	73.09
PGSC0003DMT400036836	Potato	plasma membrane	71.58	73.09
VIT_09s0002g08410.t01	Wine grape	cytosol, peroxisome, plasma membrane	74.48	72.67
KRH23609	Soybean	cytosol, peroxisome, plasma membrane	71.78	71.34
GSMUA_Achr1P15770_001	Banana	endoplasmic reticulum, peroxisome, plasma membrane	59.75	64.29
Os06t0644700-01	Rice	cytosol, peroxisome, plasma membrane	61.41	62.05
TraesCS7B01G433400.1	Wheat	cytosol, peroxisome, plasma membrane, plastid	63.07	61.91
TraesCS7A01G517100.1	Wheat	cytosol, peroxisome, plasma membrane, plastid	62.24	61.73
TraesCS7D01G507300.1	Wheat	cytosol, peroxisome, plasma membrane, plastid	62.66	61.51
EER90107	Sorghum	cytosol, peroxisome, plastid, vacuole	61.41	61.16
Zm00001d046586_P001	Maize	plasma membrane	60.17	59.55
GSMUA_Achr3P00900_001	Banana	endoplasmic reticulum, plasma membrane, vacuole	49.59	50.74
HORVU7Hr1G115450.1	Barley	cytosol, peroxisome, plastid	62.66	46.82
CDY35776	Canola	plasma membrane	39.42	41.48
CDX86347	Canola	plasma membrane	39.42	41.3
CDX85291	Canola	mitochondrion, peroxisome, plasma membrane	39.42	41.13
CDY45907	Canola	plasma membrane	39.21	41.09
CDY37894	Canola	plasma membrane	38.38	40.84
CDY67720	Canola	plasma membrane	38.8	40.83
CDY00078	Canola	plasma membrane	38.8	40.83
CDY47589	Canola	plasma membrane	35.89	38.27
CDY17030	Canola	plasma membrane	35.68	38.14
CDX74504	Canola	plasma membrane	25.52	37.85
CDY27236	Canola	plasma membrane	33.82	37.56
CDX72159	Canola	plasma membrane	33.61	37.33
CDY49071	Canola	plasma membrane	33.82	37.13
CDY27235	Canola	plasma membrane	31.12	36.95
CDX67416	Canola	plasma membrane	32.99	36.14
CDY27234	Canola	plasma membrane	33.4	35.46
CDY52929	Canola	plastid	30.91	33.48
CDY66186	Canola	plasma membrane, plastid	31.12	32.97

Protein Annotations

EnsemblPlants:CDY38675	EnsemblPlantsGene:GSBRNA2T00066405001	GO:A0A078HJK2	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:AA_transpt_TM	PANTHER:PTHR22950	PANTHER:PTHR22950:SF346	PFAM:PF01490	ProteinID:CDY38675	ProteinID:CDY38675.1
SEG:seg	TMHMM:TMhelix	UniParc:UPI0004EDC142	UniProt:A0A078HJK2	MapMan:24.2.3.4.7	:

Description

BnaC02g23040DBnaC02g23040D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HJK2]

Coordinates

chrLK032429:+:198487..199935

Molecular Weight (calculated)

51983.0 Da

IEP (calculated)

6.788

GRAVY (calculated)

0.638

Length

482 amino acids

Sequence
(BLAST)

001: MDSSYSAISK NSYLELQKQT HNAKPTSKLL PSDDETFVHD EESFVDDLDL DVSNYPIVNG SKSSQGGSGI YGAVFNLTTS IIGAGIMALP ATMKVLGLVL
101: GFVLIILMGI LSEISVELLV RFSVLYKSRS YGEVVQSALG KTARVLSEIC IIVNNGGVLV VYLIIMGDVI SGSLHHVGVL DQWLGNGFWD HRKVLILIVM
201: VVFLAPLCAL NKIDSLSVTS AASVALAVVF VVVCFAVAAI KLVEGTIDTP RMSPDFGSKK AILDLLVVIP IMSNAYVCHF NVQPIYNELE GRSPHKMNSV
301: GRITTAICVV VYASTAVSGY LLFGQDTESD ILTNFDQDLG IRFSSAVNYI VRIGYILHLV LVFPVVHFSL RETVNTLLFE GSPPLSETKK KSLALTVVLL
401: ALIYVGSTMI PNIWTAFKFT GATSAVSLGF TFPALIALRL GKQSNALSLV ERSVSWLMLI LAVVVSVVGT LGNIYSLRSK SD

Best Arabidopsis Sequence Match ( AT1G80510.1 )
(BLAST)

001: MDSSYSVISK TSYVELQKPT VNGKPRNKLL PSDEESFVND FDDARNGVGG EDADDLDFDV ADYPLVHGKS SNQGSGIYGA VFNLTTSIIG AGIMALPATM
101: KVLGLVLGFV LIILMALLSE ISVELLVRFS VLYKSKSYGE VVQFALGKTA RVLSEICIIV NNGGVLVVYL IIMGDVMSGS LHHIGVLDQW LGNGFWDHRK
201: VLILIVMVIF LAPLCALNKI DSLSVTSAAS VALAVVFVVV CFVVATIKLI EGTIDPPRLS PDFGSKQAIL DLLVVIPIMS NAYVCHFNVQ PIYNELEGRS
301: PHKMNRVGRI TTAICVVVYA STAVSGYLLF GKDTESDILT NFDQDLGIRF SSAVNYIVRI GYILHLVLVF PVIHFSLRET VNTLLFEGSP PLSESKKRSL
401: GLTVVLLALI YIGSTMIPNI WTAFKFTGAT SAVSLGFTFP ALIALRLGKQ SNSLSFVERS VSWLMLILAV VVSIVGTIGN IYSLESKSD

Arabidopsis Description

AVT6EAmino acid transporter AVT6E [Source:UniProtKB/Swiss-Prot;Acc:Q9M8L9]
SUBAcon: [peroxisome,cytosol,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.