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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • plastid 4
  • endoplasmic reticulum 2
  • extracellular 1
  • vacuole 1
  • plasma membrane 3
  • golgi 1
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:endoplasmic reticulum, plasma membrane, plastid
BaCelLo:plastid
ChloroP:plastid
MultiLoc:endoplasmic reticulum
Predotar:plastid
PProwler:secretory
TargetP:plastid
WoLF PSORT:plasma membrane
YLoc:plasma membrane
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra017005.1-P Field mustard plastid 99.1 99.32
CDY66186 Canola plasma membrane, plastid 98.65 96.48
AT2G40420.1 Thale cress plastid 86.97 87.95
CDX72159 Canola plasma membrane 77.3 79.26
CDY27236 Canola plasma membrane 76.18 78.11
CDY27235 Canola plasma membrane 68.76 75.37
CDY27234 Canola plasma membrane 73.48 72.03
VIT_13s0067g02220.t01 Wine grape golgi, plasma membrane, plastid, vacuole 59.1 59.37
KRH31212 Soybean plastid 57.75 58.95
KRG97662 Soybean plastid 57.53 58.72
KRH14877 Soybean plasma membrane 55.96 57.64
KRH73226 Soybean endoplasmic reticulum, plasma membrane, plastid, vacuole 55.96 57.37
Solyc05g052300.2.1 Tomato cytosol, peroxisome, plasma membrane 54.61 55.48
Solyc06g050800.2.1 Tomato plasma membrane 54.38 55.25
PGSC0003DMT400030399 Potato plasma membrane 54.38 55.25
PGSC0003DMT400074952 Potato plasma membrane 54.38 55.0
GSMUA_Achr7P22240_001 Banana cytosol, endoplasmic reticulum, plasma membrane 51.69 51.0
TraesCS3B01G378500.1 Wheat plasma membrane 49.21 47.82
TraesCS3D01G340400.1 Wheat plasma membrane 49.21 47.71
Os01t0825800-01 Rice plasma membrane 48.76 47.59
KXG33635 Sorghum plasma membrane 49.66 47.53
TraesCS3A01G346700.1 Wheat plasma membrane 48.99 47.49
HORVU3Hr1G088360.1 Barley peroxisome, plasma membrane 49.21 46.79
HORVU3Hr1G045630.2 Barley plastid 48.99 45.8
CDX74504 Canola plasma membrane 31.69 43.38
CDX86347 Canola plasma membrane 43.37 41.96
CDY67720 Canola plasma membrane 43.15 41.92
CDY00078 Canola plasma membrane 43.15 41.92
CDX85291 Canola mitochondrion, peroxisome, plasma membrane 43.37 41.77
CDY45907 Canola plasma membrane 42.92 41.52
CDY35776 Canola plasma membrane 42.7 41.48
CDY37894 Canola plasma membrane 41.35 40.62
CDY17030 Canola plasma membrane 38.43 37.92
CDY47589 Canola plasma membrane 38.43 37.83
CDX67416 Canola plasma membrane 35.96 36.36
CDY49071 Canola plasma membrane 35.28 35.76
CDX79381 Canola plasma membrane 35.28 33.98
CDX67951 Canola plasma membrane 35.51 33.69
Zm00001d012485_P001 Maize golgi, plasma membrane, plastid 49.66 33.18
CDY39969 Canola plasma membrane 34.38 31.61
CDX87318 Canola plasma membrane 34.16 31.41
CDY37600 Canola cytosol, peroxisome, plasma membrane 33.71 31.12
CDY38675 Canola plasma membrane 33.48 30.91
Zm00001d030531_P001 Maize extracellular, plasma membrane, vacuole 12.58 30.43
Protein Annotations
EnsemblPlants:CDY52929EnsemblPlantsGene:GSBRNA2T00008113001GO:A0A078ITZ9GO:GO:0005575GO:GO:0016020GO:GO:0016021
InterPro:AA_transpt_TMPANTHER:PTHR22950PANTHER:PTHR22950:SF323PFAM:PF01490ProteinID:CDY52929ProteinID:CDY52929.1
SEG:segTMHMM:TMhelixUniParc:UPI0004EE2750UniProt:A0A078ITZ9MapMan:24.2.3.4.7:
Description
BnaA04g29360DBnaA04g29360D protein [Source:UniProtKB/TrEMBL;Acc:A0A078ITZ9]
Coordinates
chrLK033142:+:57495..59720
Molecular Weight (calculated)
47950.1 Da
IEP (calculated)
7.995
GRAVY (calculated)
0.808
Length
445 amino acids
Sequence
(BLAST)
001: MTPAIKAPLL PNHDPSSPSS SSPPEEKHGS FAGAIFNVST SIVGAGIMSI PAAFKVLGVI PSLSIIVIIA WLSNVSAGFL MKSTVAGDAT TYAGVMKESF
101: GKPGSVAVQV ITMVVTFGSM IIFSIIIGDV LSGNEKGGVI HLGLLQGWFG SHWWNTRFFS LLFIFAFLFL PLVLCRRVDR LALSSAISFL LALLFVIISS
201: VLAIVALVQG RTKSPRLFPD LNNGGQSFFN LFTASPVIVT AFTFHFNLHP VGFELKDPLQ VLSATRVSVI LCATIYSATG LFCYLLFGDA TMTDVLMNFD
301: ESSGSSIGSL LNDIVRASYA IHLMLVFPLL NFSLRANLDE LLFPKKVSLV NDNKRFFGLT FPLLISCFLA AIAIPDIWYF FQFLGSTSTV SIAFIFPAAI
401: VLRNVNGIST LKEKIVASVM FALAVATSII AISTNIYSFT ETEEA
Best Arabidopsis Sequence Match ( AT2G40420.1 )
(BLAST)
001: MSPAIKAPLL PNQEPSSSSS ENHGSFAGAV FNISTSIVGA GIMAIPAAFK VLGVIPSLSI IVIIAWLSNV SAGFLMKSSL AGESTTYAGV MKESFGKSGA
101: VAVTVVTMVV TFGSMIIFSI IIGDVISGNE KDGIIHLGLL QEWFGSHWWN TRFFGLLFIF VFLFLPLVLC RRVERLAFSS AISFLLALLF VVISSVLAII
201: ALVQGKTKPP RLFPELNDGG LSFFSLFTAS PVIVTAFTFH FNVHPVAFEL KDPLNVLSAT RISVILCATI YSATGLFCYL LFGDSTMTDV LMNFDQSTSS
301: SVGSLLNDIV RLSYAIHLML VFPLLNFSLR ANLDELLFPM KLSLVEDNKR FFALTFPLLI SCFLGAIAIP DIWYFFQFLG STSTVSIAFI FPAAIVLRNV
401: NGFSTLREKI VASVMLVLAV ATSIIAISTN IYTFTATEET
Arabidopsis Description
AVT6DAmino acid transporter AVT6D [Source:UniProtKB/Swiss-Prot;Acc:Q0WQJ3]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.