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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane

Predictor Summary:
  • plastid 2
  • plasma membrane 4
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • golgi 1
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane
Any Predictor:plasma membrane, plastid
BaCelLo:plastid
iPSORT:plastid
MultiLoc:plasma membrane
PProwler:secretory
WoLF PSORT:plasma membrane
YLoc:plasma membrane
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra007225.1-P Field mustard plasma membrane 97.7 97.7
CDX72159 Canola plasma membrane 97.23 97.23
CDY27235 Canola plasma membrane 84.1 89.9
AT3G56200.1 Thale cress plasma membrane 89.63 89.43
CDY27234 Canola plasma membrane 91.47 87.44
CDY52929 Canola plastid 78.11 76.18
CDY66186 Canola plasma membrane, plastid 77.42 73.85
VIT_13s0067g02220.t01 Wine grape golgi, plasma membrane, plastid, vacuole 62.44 61.17
Solyc05g052300.2.1 Tomato cytosol, peroxisome, plasma membrane 61.06 60.5
KRH73226 Soybean endoplasmic reticulum, plasma membrane, plastid, vacuole 60.37 60.37
KRH14877 Soybean plasma membrane 59.91 60.19
PGSC0003DMT400030399 Potato plasma membrane 60.37 59.82
KRG97662 Soybean plastid 59.68 59.4
KRH31212 Soybean plastid 59.45 59.17
PGSC0003DMT400074952 Potato plasma membrane 57.37 56.59
Solyc06g050800.2.1 Tomato plasma membrane 56.91 56.39
GSMUA_Achr7P22240_001 Banana cytosol, endoplasmic reticulum, plasma membrane 53.0 51.0
Os01t0825800-01 Rice plasma membrane 52.3 49.78
KXG33635 Sorghum plasma membrane 51.61 48.17
HORVU3Hr1G088360.1 Barley peroxisome, plasma membrane 51.84 48.08
TraesCS3B01G378500.1 Wheat plasma membrane 50.0 47.38
TraesCS3D01G340400.1 Wheat plasma membrane 50.0 47.28
TraesCS3A01G346700.1 Wheat plasma membrane 49.77 47.06
HORVU3Hr1G045630.2 Barley plastid 50.23 45.8
CDX74504 Canola plasma membrane 33.64 44.92
CDX86347 Canola plasma membrane 45.85 43.26
CDX85291 Canola mitochondrion, peroxisome, plasma membrane 45.85 43.07
CDY45907 Canola plasma membrane 45.16 42.61
CDY35776 Canola plasma membrane 44.7 42.36
CDY67720 Canola plasma membrane 44.24 41.92
CDY00078 Canola plasma membrane 44.24 41.92
CDY37894 Canola plasma membrane 43.09 41.28
CDY17030 Canola plasma membrane 41.71 40.13
CDY47589 Canola plasma membrane 41.47 39.82
CDX67416 Canola plasma membrane 38.02 37.5
CDY49071 Canola plasma membrane 37.33 36.9
CDX79381 Canola plasma membrane 38.94 36.58
CDX67951 Canola plasma membrane 38.48 35.61
CDY39969 Canola plasma membrane 38.48 34.5
CDX87318 Canola plasma membrane 38.25 34.3
CDY37600 Canola cytosol, peroxisome, plasma membrane 37.79 34.02
CDY38675 Canola plasma membrane 37.56 33.82
Zm00001d012485_P001 Maize golgi, plasma membrane, plastid 50.92 33.18
Zm00001d030531_P001 Maize extracellular, plasma membrane, vacuole 12.9 30.43
Protein Annotations
MapMan:24.2.3.4.7GO:A0A078GPG9UniProt:A0A078GPG9InterPro:AA/rel_permease1InterPro:AA_transpt_TMEnsemblPlants:CDY27236
ProteinID:CDY27236ProteinID:CDY27236.1GO:GO:0003333GO:GO:0003674GO:GO:0005215GO:GO:0005575
GO:GO:0006810GO:GO:0008150GO:GO:0015171GO:GO:0016020GO:GO:0016021GO:GO:0022857
GO:GO:0055085EnsemblPlantsGene:GSBRNA2T00037110001PFAM:PF01490PIRSF:PIRSF006060PANTHER:PTHR22950PANTHER:PTHR22950:SF323
TMHMM:TMhelixUniParc:UPI0004EEDD23SEG:seg:::
Description
BnaA09g35660DBnaA09g35660D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GPG9]
Coordinates
chrLK032201:-:290597..292850
Molecular Weight (calculated)
46693.0 Da
IEP (calculated)
8.709
GRAVY (calculated)
0.843
Length
434 amino acids
Sequence
(BLAST)
001: MSPPIKTPLL PKQEPSSEKH GSTSGVVFNV STSIIGAGIM SMPAAFKVLG VIPALLIITI IGWLSTISVG FLMKSTLAGE ATTYAGVMKE SFGKTGSVAV
101: QVATMVATFG CMVIFSIIIG DVLSGNDNGG SVHIGVLQEW FGSHWWNTRI FALLFIYAFV LLPLVLCRRV ERLAFSSAIS FLLAVLFVVI SSVLAISALM
201: KGQTKNPRLF PDLTDGGSFW NLFTASPVIV TAFTFHFNVH PIGFELKDPL HVIPATKISV ILCAAIYFAT GLFGYLLFGD ATMSDILVNF DQSSGSSIGS
301: LLNDIVRLSY ALHLMLVFPL MNFSLRANLD ELMFPTTKAP LAKDTKRFVG LTLALLICCF LSAIAVPDIW YFFQFLGSTT TVSIAFIFPA AIVLRNVHGV
401: STSREKIVAA IMLVLAVATS IVAISTNLYS LTSN
Best Arabidopsis Sequence Match ( AT3G56200.1 )
(BLAST)
001: MTPQIKTHLL PKQEPSSSEN HGSSTSGIVF NVSTSIIGAG IMSMPAAFKV LGIVPAFLII TIIAWLSTIS VGFLMKSTLA GESTTYAGVM KESFGKTGSI
101: AVQIATMVAT FGCMIIFSII IGDVLSGNEN GGPEHIGVLQ EWFGSYWWNT RIFALLFVYG FVLLPLVLRR RVERLAISSA VSFLLAVLFV VISSVLAISA
201: LVNGQTKNPR LFPELSNGGS FWQLFTASPV IVTAFTFHFN VHPIGFELKD PLQVIPATKI SVILCAAIYF ATGLFGYLLF GDATMSDILV NFDQSSGSSI
301: GSLLNDIVRL SYVLHLMLVF PLLNFSLRAN LDELLYPKKP SLEKDTKRFI GLTLALLICC FLSAIAVPDI WYFFQFMGST ITVSIAFIFP AAIVLRNIHG
401: VSTSREKIVA AIMLVLAVAT SIIAISTNLY SLAAN
Arabidopsis Description
AVT6CAmino acid transporter AVT6C [Source:UniProtKB/Swiss-Prot;Acc:Q9LYM2]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.