CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
plasma membrane 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
golgi 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	nucleus, peroxisome, plasma membrane
BaCelLo:	nucleus
MultiLoc:	plasma membrane
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX87318	Canola	plasma membrane	97.93	97.93
AT1G80510.1	Thale cress	cytosol, peroxisome, plasma membrane	90.91	89.98
CDY37600	Canola	cytosol, peroxisome, plasma membrane	89.05	89.42
CDY38675	Canola	plasma membrane	88.84	89.21
CDX79381	Canola	plasma membrane	83.26	87.23
CDX67951	Canola	plasma membrane	83.68	86.35
KRH09698	Soybean	plasma membrane	67.98	78.52
KRH23609	Soybean	cytosol, peroxisome, plasma membrane	72.31	72.16
PGSC0003DMT400036836	Potato	plasma membrane	70.25	72.03
Solyc03g117350.1.1	Tomato	plasma membrane	70.04	71.82
VIT_09s0002g08410.t01	Wine grape	cytosol, peroxisome, plasma membrane	72.93	71.46
GSMUA_Achr1P15770_001	Banana	endoplasmic reticulum, peroxisome, plasma membrane	58.88	63.62
Os06t0644700-01	Rice	cytosol, peroxisome, plasma membrane	59.71	60.59
TraesCS7B01G433400.1	Wheat	cytosol, peroxisome, plasma membrane, plastid	61.16	60.29
TraesCS7A01G517100.1	Wheat	cytosol, peroxisome, plasma membrane, plastid	60.33	60.08
TraesCS7D01G507300.1	Wheat	cytosol, peroxisome, plasma membrane, plastid	60.74	59.88
EER90107	Sorghum	cytosol, peroxisome, plastid, vacuole	59.5	59.5
Zm00001d046586_P001	Maize	plasma membrane	58.68	58.32
GSMUA_Achr3P00900_001	Banana	endoplasmic reticulum, plasma membrane, vacuole	48.55	49.89
HORVU7Hr1G115450.1	Barley	cytosol, peroxisome, plastid	60.74	45.58
CDY35776	Canola	plasma membrane	39.67	41.92
CDX86347	Canola	plasma membrane	39.67	41.74
CDX85291	Canola	mitochondrion, peroxisome, plasma membrane	39.67	41.56
CDY45907	Canola	plasma membrane	39.46	41.52
CDY67720	Canola	plasma membrane	39.05	41.27
CDY00078	Canola	plasma membrane	39.05	41.27
CDY37894	Canola	plasma membrane	38.43	41.06
CDY47589	Canola	plasma membrane	36.36	38.94
CDY17030	Canola	plasma membrane	36.16	38.8
CDY27236	Canola	plasma membrane	34.5	38.48
CDX72159	Canola	plasma membrane	34.5	38.48
CDY49071	Canola	plasma membrane	34.71	38.27
CDY27235	Canola	plasma membrane	31.82	37.93
CDX74504	Canola	plasma membrane	25.21	37.54
CDX67416	Canola	plasma membrane	34.09	37.5
CDY27234	Canola	plasma membrane	34.3	36.56
CDY52929	Canola	plastid	31.61	34.38
CDY66186	Canola	plasma membrane, plastid	31.82	33.85

Protein Annotations

EnsemblPlants:CDY39969	EnsemblPlantsGene:GSBRNA2T00068855001	GO:A0A078HRR6	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:AA_transpt_TM	PANTHER:PTHR22950	PANTHER:PTHR22950:SF346	PFAM:PF01490	ProteinID:CDY39969	ProteinID:CDY39969.1
SEG:seg	TMHMM:TMhelix	UniParc:UPI0004EDF827	UniProt:A0A078HRR6	MapMan:24.2.3.4.7	:

Description

BnaC06g40470DBnaC06g40470D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HRR6]

Coordinates

chrLK032461:-:130220..131674

Molecular Weight (calculated)

52448.6 Da

IEP (calculated)

6.312

GRAVY (calculated)

0.647

Length

484 amino acids

Sequence
(BLAST)

001: MDSSYSVISK NSNVELQKQT TKLLPPSDEE SFVNDFDDTR SVVGDQEADD LDFDISNYPL VNGKSSQGGS GIHGAVFNLT TSIIGAGIMA LPATMKVLGL
101: VLGFVLIILM AILSEISVEL LIRFSVLYKS RSYGEVVQFA MGRTARVLSE ICIIVNNGGV LVVYLIIMGD VMSGSLHHIG VLDQWLGNGF WDHRKVLILI
201: VMVVFLAPLC ALNKIDSLSV TSAASVALAV VFVVVCFAVA AIKLVEGTID TPRMSPDFSS KEAILDLLVV IPIMSNAYVC HFNVQPIYNE LEGRSPHKMN
301: RVGRITTAIC VVVYASTAIS GYLLFGLATE ADILTNFDQD LGIRFSSAVN YVVRIGYILH LVLVFPVIHF SLRETVNTLL FEGSPPLSES KKRSLGLTLI
401: LLALIYIGST MIPNIWTAFK FTGATSAVSL GFTFPALIAL RLGKQSNTLS FLEKSVSWLM LILAVVVSIV GTVGNIYSIR SKSD

Best Arabidopsis Sequence Match ( AT1G80510.1 )
(BLAST)

001: MDSSYSVISK TSYVELQKPT VNGKPRNKLL PSDEESFVND FDDARNGVGG EDADDLDFDV ADYPLVHGKS SNQGSGIYGA VFNLTTSIIG AGIMALPATM
101: KVLGLVLGFV LIILMALLSE ISVELLVRFS VLYKSKSYGE VVQFALGKTA RVLSEICIIV NNGGVLVVYL IIMGDVMSGS LHHIGVLDQW LGNGFWDHRK
201: VLILIVMVIF LAPLCALNKI DSLSVTSAAS VALAVVFVVV CFVVATIKLI EGTIDPPRLS PDFGSKQAIL DLLVVIPIMS NAYVCHFNVQ PIYNELEGRS
301: PHKMNRVGRI TTAICVVVYA STAVSGYLLF GKDTESDILT NFDQDLGIRF SSAVNYIVRI GYILHLVLVF PVIHFSLRET VNTLLFEGSP PLSESKKRSL
401: GLTVVLLALI YIGSTMIPNI WTAFKFTGAT SAVSLGFTFP ALIALRLGKQ SNSLSFVERS VSWLMLILAV VVSIVGTIGN IYSLESKSD

Arabidopsis Description

AVT6EAmino acid transporter AVT6E [Source:UniProtKB/Swiss-Prot;Acc:Q9M8L9]
SUBAcon: [peroxisome,cytosol,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.