Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, cytosol, plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 1
- mitochondrion 1
- cytosol 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 2
- golgi 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY39969 | Canola | plasma membrane | 89.98 | 90.91 |
| CDX87318 | Canola | plasma membrane | 89.78 | 90.7 |
| Bra008469.1-P | Field mustard | plasma membrane | 89.16 | 90.46 |
| Bra035175.1-P | Field mustard | plasma membrane | 89.37 | 90.29 |
| CDY37600 | Canola | cytosol, peroxisome, plasma membrane | 88.96 | 90.25 |
| CDY38675 | Canola | plasma membrane | 88.55 | 89.83 |
| CDX79381 | Canola | plasma membrane | 84.25 | 89.18 |
| Bra003570.1-P | Field mustard | cytosol | 83.23 | 88.29 |
| CDX67951 | Canola | plasma membrane | 84.46 | 88.06 |
| KRH09698 | Soybean | plasma membrane | 67.69 | 79.0 |
| PGSC0003DMT400036836 | Potato | plasma membrane | 71.78 | 74.36 |
| Solyc03g117350.1.1 | Tomato | plasma membrane | 71.37 | 73.94 |
| VIT_09s0002g08410.t01 | Wine grape | cytosol, peroxisome, plasma membrane | 73.42 | 72.67 |
| KRH23609 | Soybean | cytosol, peroxisome, plasma membrane | 71.37 | 71.96 |
| GSMUA_Achr1P15770_001 | Banana | endoplasmic reticulum, peroxisome, plasma membrane | 58.69 | 64.06 |
| Os06t0644700-01 | Rice | cytosol, peroxisome, plasma membrane | 60.74 | 62.26 |
| TraesCS7B01G433400.1 | Wheat | cytosol, peroxisome, plasma membrane, plastid | 60.94 | 60.69 |
| EER90107 | Sorghum | cytosol, peroxisome, plastid, vacuole | 59.92 | 60.54 |
| TraesCS7A01G517100.1 | Wheat | cytosol, peroxisome, plasma membrane, plastid | 59.71 | 60.08 |
| TraesCS7D01G507300.1 | Wheat | cytosol, peroxisome, plasma membrane, plastid | 60.12 | 59.88 |
| Zm00001d046586_P001 | Maize | plasma membrane | 58.9 | 59.14 |
| GSMUA_Achr3P00900_001 | Banana | endoplasmic reticulum, plasma membrane, vacuole | 48.47 | 50.32 |
| HORVU7Hr1G115450.1 | Barley | cytosol, peroxisome, plastid | 60.33 | 45.74 |
| AT3G30390.2 | Thale cress | plasma membrane | 39.26 | 41.74 |
| AT5G38820.2 | Thale cress | plasma membrane | 38.45 | 40.78 |
| AT3G56200.1 | Thale cress | plasma membrane | 34.76 | 39.08 |
| AT2G40420.1 | Thale cress | plastid | 33.13 | 36.82 |
Protein Annotations
| MapMan:24.2.3.4.7 | EntrezGene:844390 | UniProt:A0A178W1H5 | ProteinID:AAF27127.1 | InterPro:AA_transpt_TM | ProteinID:AEE36414.1 |
| EMBL:AF428472 | ArrayExpress:AT1G80510 | EnsemblPlantsGene:AT1G80510 | RefSeq:AT1G80510 | TAIR:AT1G80510 | RefSeq:AT1G80510-TAIR-G |
| EnsemblPlants:AT1G80510.1 | TAIR:AT1G80510.1 | EMBL:AY149936 | Unigene:At.26250 | GO:GO:0003333 | GO:GO:0003674 |
| GO:GO:0005215 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005773 |
| GO:GO:0005774 | GO:GO:0005783 | GO:GO:0005789 | GO:GO:0006810 | GO:GO:0006865 | GO:GO:0008150 |
| GO:GO:0015171 | GO:GO:0016020 | GO:GO:0016021 | RefSeq:NP_565239.1 | ProteinID:OAP12357.1 | PFAM:PF01490 |
| PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 |
| PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 |
| PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 |
| PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 |
| PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 |
| PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 |
| PO:PO:0025195 | PO:PO:0025281 | PANTHER:PTHR22950 | PANTHER:PTHR22950:SF346 | UniProt:Q9M8L9 | TMHMM:TMhelix |
| UniParc:UPI00000484C8 | SEG:seg | : | : | : | : |
Description
AVT6EAmino acid transporter AVT6E [Source:UniProtKB/Swiss-Prot;Acc:Q9M8L9]
Coordinates
chr1:+:30272849..30274891
Molecular Weight (calculated)
52961.2 Da
IEP (calculated)
6.313
GRAVY (calculated)
0.608
Length
489 amino acids
Sequence
(BLAST)
(BLAST)
001: MDSSYSVISK TSYVELQKPT VNGKPRNKLL PSDEESFVND FDDARNGVGG EDADDLDFDV ADYPLVHGKS SNQGSGIYGA VFNLTTSIIG AGIMALPATM
101: KVLGLVLGFV LIILMALLSE ISVELLVRFS VLYKSKSYGE VVQFALGKTA RVLSEICIIV NNGGVLVVYL IIMGDVMSGS LHHIGVLDQW LGNGFWDHRK
201: VLILIVMVIF LAPLCALNKI DSLSVTSAAS VALAVVFVVV CFVVATIKLI EGTIDPPRLS PDFGSKQAIL DLLVVIPIMS NAYVCHFNVQ PIYNELEGRS
301: PHKMNRVGRI TTAICVVVYA STAVSGYLLF GKDTESDILT NFDQDLGIRF SSAVNYIVRI GYILHLVLVF PVIHFSLRET VNTLLFEGSP PLSESKKRSL
401: GLTVVLLALI YIGSTMIPNI WTAFKFTGAT SAVSLGFTFP ALIALRLGKQ SNSLSFVERS VSWLMLILAV VVSIVGTIGN IYSLESKSD
101: KVLGLVLGFV LIILMALLSE ISVELLVRFS VLYKSKSYGE VVQFALGKTA RVLSEICIIV NNGGVLVVYL IIMGDVMSGS LHHIGVLDQW LGNGFWDHRK
201: VLILIVMVIF LAPLCALNKI DSLSVTSAAS VALAVVFVVV CFVVATIKLI EGTIDPPRLS PDFGSKQAIL DLLVVIPIMS NAYVCHFNVQ PIYNELEGRS
301: PHKMNRVGRI TTAICVVVYA STAVSGYLLF GKDTESDILT NFDQDLGIRF SSAVNYIVRI GYILHLVLVF PVIHFSLRET VNTLLFEGSP PLSESKKRSL
401: GLTVVLLALI YIGSTMIPNI WTAFKFTGAT SAVSLGFTFP ALIALRLGKQ SNSLSFVERS VSWLMLILAV VVSIVGTIGN IYSLESKSD
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.