Factsheet for PGSC0003DMT400036836

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
plasma membrane 3
golgi 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	nucleus, peroxisome, secretory
BaCelLo:	nucleus
MultiLoc:	plasma membrane
Plant-mPloc:	golgi
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g117350.1.1	Tomato	plasma membrane	97.46	97.46
KRH09698	Soybean	plasma membrane	69.28	78.04
Bra008469.1-P	Field mustard	plasma membrane	73.31	71.78
AT1G80510.1	Thale cress	cytosol, peroxisome, plasma membrane	74.36	71.78
CDY37600	Canola	cytosol, peroxisome, plasma membrane	73.09	71.58
CDY38675	Canola	plasma membrane	73.09	71.58
VIT_09s0002g08410.t01	Wine grape	cytosol, peroxisome, plasma membrane	74.79	71.46
CDX79381	Canola	plasma membrane	69.92	71.43
KRH23609	Soybean	cytosol, peroxisome, plasma membrane	72.88	70.93
Bra003570.1-P	Field mustard	cytosol	69.07	70.72
CDY39969	Canola	plasma membrane	72.03	70.25
CDX67951	Canola	plasma membrane	69.7	70.15
CDX87318	Canola	plasma membrane	71.19	69.42
Bra035175.1-P	Field mustard	plasma membrane	70.76	69.01
GSMUA_Achr1P15770_001	Banana	endoplasmic reticulum, peroxisome, plasma membrane	62.29	65.62
Os06t0644700-01	Rice	cytosol, peroxisome, plasma membrane	64.41	63.73
EER90107	Sorghum	cytosol, peroxisome, plastid, vacuole	64.41	62.81
TraesCS7A01G517100.1	Wheat	cytosol, peroxisome, plasma membrane, plastid	64.62	62.76
TraesCS7B01G433400.1	Wheat	cytosol, peroxisome, plasma membrane, plastid	65.25	62.73
TraesCS7D01G507300.1	Wheat	cytosol, peroxisome, plasma membrane, plastid	65.04	62.53
Zm00001d046586_P001	Maize	plasma membrane	63.56	61.6
GSMUA_Achr3P00900_001	Banana	endoplasmic reticulum, plasma membrane, vacuole	50.42	50.53
HORVU7Hr1G115450.1	Barley	cytosol, peroxisome, plastid	64.83	47.44
PGSC0003DMT400003740	Potato	plasma membrane	42.8	41.91
PGSC0003DMT400068294	Potato	plasma membrane	41.1	41.9
PGSC0003DMT400012670	Potato	plasma membrane	34.75	41.21
PGSC0003DMT400012672	Potato	plasma membrane	38.35	40.13
PGSC0003DMT400030399	Potato	plasma membrane	35.59	38.36
PGSC0003DMT400074955	Potato	plasma membrane	34.96	37.5
PGSC0003DMT400074952	Potato	plasma membrane	34.11	36.59

Protein Annotations

EntrezGene:102579816	MapMan:24.2.3.4.7	InterPro:AA_transpt_TM	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005773	GO:GO:0005774	GO:GO:0005783	GO:GO:0005789	GO:GO:0016020
GO:GO:0016021	UniProt:M1B4B4	PFAM:PF01490	EnsemblPlantsGene:PGSC0003DMG400014203	PGSC:PGSC0003DMG400014203	EnsemblPlants:PGSC0003DMT400036836
PANTHER:PTHR22950	PANTHER:PTHR22950:SF346	TMHMM:TMhelix	UniParc:UPI000296A36D	RefSeq:XP_006341389.1	SEG:seg

Description

Amino acid transporter [Source:PGSC_GENE;Acc:PGSC0003DMG400014203]

Coordinates

chr3:-:57084598..57086764

Molecular Weight (calculated)

51266.1 Da

IEP (calculated)

5.249

GRAVY (calculated)

0.628

Length

472 amino acids

Sequence
(BLAST)

001: MDSNYSSVSK ESFVELQVKD DNFRDNEYLK PNSGDDFEAD DIDLDDLPLI FGENKSGSGE HGAVFNLTTT IIGAGIMALP ATMKVLGLVV GVILIFLMGV
101: LSEISVELLV RFSVQCKALS YGEVVEAALG KTAKILSEIC IIVNNAGVLV VYLIIIGDVL SGSIRHTGVF DQWLGHGVWD HRKLVVLIIL VIFLAPLCAM
201: DKIDSLSLSS AASVALAIVF VVVAFTIAFI KLVEGKIEAP RMTPDFGSKQ AILDLLVVIP IMSNAYVCHF NVQPIYNELE GRSPQKMNRV SRITSAICVL
301: VYASTAVAGY LLFGKDTESD ILTNFDKDLG IRFSTALNYI VRVGYVFHLV LVFPVIHFSL RQTVDALLFE GSAPLTESRK RCLALTAVLL ALLYFGSTMI
401: PNIWTAFKFT GATTAVSLGY TFPSLIALRL GKQGSGLSMR EKILSWFMLI LAIVVSIVGV GGNIYSMSSE SD

Best Arabidopsis Sequence Match ( AT1G80510.1 )
(BLAST)

001: MDSSYSVISK TSYVELQKPT VNGKPRNKLL PSDEESFVND FDDARNGVGG EDADDLDFDV ADYPLVHGKS SNQGSGIYGA VFNLTTSIIG AGIMALPATM
101: KVLGLVLGFV LIILMALLSE ISVELLVRFS VLYKSKSYGE VVQFALGKTA RVLSEICIIV NNGGVLVVYL IIMGDVMSGS LHHIGVLDQW LGNGFWDHRK
201: VLILIVMVIF LAPLCALNKI DSLSVTSAAS VALAVVFVVV CFVVATIKLI EGTIDPPRLS PDFGSKQAIL DLLVVIPIMS NAYVCHFNVQ PIYNELEGRS
301: PHKMNRVGRI TTAICVVVYA STAVSGYLLF GKDTESDILT NFDQDLGIRF SSAVNYIVRI GYILHLVLVF PVIHFSLRET VNTLLFEGSP PLSESKKRSL
401: GLTVVLLALI YIGSTMIPNI WTAFKFTGAT SAVSLGFTFP ALIALRLGKQ SNSLSFVERS VSWLMLILAV VVSIVGTIGN IYSLESKSD

Arabidopsis Description

AVT6EAmino acid transporter AVT6E [Source:UniProtKB/Swiss-Prot;Acc:Q9M8L9]
SUBAcon: [peroxisome,cytosol,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.