Factsheet for PGSC0003DMT400074955

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 1
plasma membrane 4
golgi 2
extracellular 1
endoplasmic reticulum 1
vacuole 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	plastid, secretory
BaCelLo:	plastid
MultiLoc:	plasma membrane
Plant-mPloc:	golgi
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g050790.2.1	Tomato	plasma membrane	96.14	97.24
KRH73229	Soybean	plasma membrane	62.05	61.9
KRH14885	Soybean	plasma membrane	62.05	61.63
PGSC0003DMT400030399	Potato	plasma membrane	56.59	56.85
PGSC0003DMT400074952	Potato	plasma membrane	55.45	55.45
GSMUA_Achr7P22240_001	Banana	cytosol, endoplasmic reticulum, plasma membrane	50.68	49.45
Os01t0825800-01	Rice	plasma membrane	50.91	49.12
TraesCS3B01G378500.1	Wheat	plasma membrane	50.45	48.47
KXG33635	Sorghum	plasma membrane	51.14	48.39
TraesCS3A01G346700.1	Wheat	plasma membrane	50.45	48.37
TraesCS3D01G340400.1	Wheat	plasma membrane	50.23	48.15
HORVU3Hr1G088360.1	Barley	peroxisome, plasma membrane	50.68	47.65
PGSC0003DMT400012670	Potato	plasma membrane	42.5	46.98
HORVU3Hr1G045630.2	Barley	plastid	50.23	46.43
PGSC0003DMT400012672	Potato	plasma membrane	47.05	45.9
PGSC0003DMT400068294	Potato	plasma membrane	45.68	43.41
PGSC0003DMT400003740	Potato	plasma membrane	45.45	41.49
KRG90323	Soybean	plasma membrane, vacuole	24.09	36.43
PGSC0003DMT400036836	Potato	plasma membrane	37.5	34.96
Zm00001d012485_P001	Maize	golgi, plasma membrane, plastid	51.14	33.78
Zm00001d030531_P001	Maize	extracellular, plasma membrane, vacuole	12.5	29.89

Protein Annotations

EnsemblPlants:PGSC0003DMT400074955	EnsemblPlantsGene:PGSC0003DMG400029154	EntrezGene:102602073	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:AA_transpt_TM	PANTHER:PTHR22950	PANTHER:PTHR22950:SF323	PFAM:PF01490	PGSC:PGSC0003DMG400029154	RefSeq:XP_006353402.1
SEG:seg	TMHMM:TMhelix	UniParc:UPI0002966A7D	UniProt:M1CUE8	MapMan:24.2.3.4.7	:

Description

Amino acid transporter [Source:PGSC_GENE;Acc:PGSC0003DMG400029154]

Coordinates

chr6:+:30893598..30898031

Molecular Weight (calculated)

48201.8 Da

IEP (calculated)

6.666

GRAVY (calculated)

0.821

Length

440 amino acids

Sequence
(BLAST)

001: MTTEKQDCGS LAPLLPVEQD ERSGRGGSIS GAIFNISTGM VGAGIMSIPA TFKVLGVIPS FFVILLVGYF VEVTVDFLLK YTHSGESDSY GGLMAESFGK
101: FGSVALQICV MITNLGALII YLIIIGDVLS GNNSDGSVHL GTLQEWFGIH WWTSRAFSVL VVVVFVMLPL LSLKRIDSLR HASAISILLA VLFVVICSMM
201: AIHAMWEGKT QKLRLVPDFS HGVSFSELFT TIPVFATAFG CHVNVHPIRA ELGRPSDMTS AVRISLILCV VIYFAVGFFG YLLFGDSIMA DMLVNFDQAS
301: DSLIGTALND IVRLSYAIHL MLVFPVMNYS LRVNVDELFF PKRPLLATET LRFFSLTCIL LAFIYGGAVA IPNIWYFFQF MGTTTVMCIM FIFPSSIVLR
401: DAHNISTTRE KILAVLVIIF AIGTSSVAIY SNIAIYIANK

Best Arabidopsis Sequence Match ( AT3G56200.1 )
(BLAST)

001: MTPQIKTHLL PKQEPSSSEN HGSSTSGIVF NVSTSIIGAG IMSMPAAFKV LGIVPAFLII TIIAWLSTIS VGFLMKSTLA GESTTYAGVM KESFGKTGSI
101: AVQIATMVAT FGCMIIFSII IGDVLSGNEN GGPEHIGVLQ EWFGSYWWNT RIFALLFVYG FVLLPLVLRR RVERLAISSA VSFLLAVLFV VISSVLAISA
201: LVNGQTKNPR LFPELSNGGS FWQLFTASPV IVTAFTFHFN VHPIGFELKD PLQVIPATKI SVILCAAIYF ATGLFGYLLF GDATMSDILV NFDQSSGSSI
301: GSLLNDIVRL SYVLHLMLVF PLLNFSLRAN LDELLYPKKP SLEKDTKRFI GLTLALLICC FLSAIAVPDI WYFFQFMGST ITVSIAFIFP AAIVLRNIHG
401: VSTSREKIVA AIMLVLAVAT SIIAISTNLY SLAAN

Arabidopsis Description

AVT6CAmino acid transporter AVT6C [Source:UniProtKB/Swiss-Prot;Acc:Q9LYM2]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.