Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- golgi 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3B01G378500.1 | Wheat | plasma membrane | 97.39 | 97.6 |
| TraesCS3A01G346700.1 | Wheat | plasma membrane | 97.17 | 97.17 |
| HORVU3Hr1G045630.2 | Barley | plastid | 93.68 | 90.34 |
| KXG33635 | Sorghum | plasma membrane | 81.48 | 80.43 |
| Os01t0825800-01 | Rice | plasma membrane | 76.69 | 77.19 |
| GSMUA_Achr7P22240_001 | Banana | cytosol, endoplasmic reticulum, plasma membrane | 58.61 | 59.65 |
| VIT_13s0067g02220.t01 | Wine grape | golgi, plasma membrane, plastid, vacuole | 54.03 | 55.98 |
| Zm00001d012485_P001 | Maize | golgi, plasma membrane, plastid | 79.74 | 54.95 |
| KRH31212 | Soybean | plastid | 50.33 | 52.98 |
| Solyc05g052300.2.1 | Tomato | cytosol, peroxisome, plasma membrane | 50.33 | 52.74 |
| KRG97662 | Soybean | plastid | 49.89 | 52.52 |
| PGSC0003DMT400030399 | Potato | plasma membrane | 49.89 | 52.28 |
| Solyc06g050800.2.1 | Tomato | plasma membrane | 49.02 | 51.37 |
| PGSC0003DMT400074952 | Potato | plasma membrane | 49.24 | 51.36 |
| KRH73229 | Soybean | plasma membrane | 49.24 | 51.25 |
| KRH14877 | Soybean | plasma membrane | 48.15 | 51.16 |
| CDY27235 | Canola | plasma membrane | 45.1 | 50.99 |
| KRH73226 | Soybean | endoplasmic reticulum, plasma membrane, plastid, vacuole | 48.15 | 50.92 |
| KRH14885 | Soybean | plasma membrane | 49.02 | 50.79 |
| Solyc06g050790.2.1 | Tomato | plasma membrane | 47.71 | 50.34 |
| PGSC0003DMT400074955 | Potato | plasma membrane | 48.15 | 50.23 |
| CDX72159 | Canola | plasma membrane | 47.28 | 50.0 |
| CDY27236 | Canola | plasma membrane | 47.28 | 50.0 |
| Bra007225.1-P | Field mustard | plasma membrane | 47.06 | 49.77 |
| Bra017005.1-P | Field mustard | plastid | 47.71 | 49.32 |
| CDY52929 | Canola | plastid | 47.71 | 49.21 |
| AT2G40420.1 | Thale cress | plastid | 46.62 | 48.64 |
| AT3G56200.1 | Thale cress | plasma membrane | 45.97 | 48.51 |
| CDY27234 | Canola | plasma membrane | 47.93 | 48.46 |
| CDY66186 | Canola | plasma membrane, plastid | 47.49 | 47.91 |
| Bra007226.1-P | Field mustard | plasma membrane | 43.36 | 47.61 |
| TraesCS7D01G213900.1 | Wheat | plasma membrane | 46.62 | 46.42 |
| TraesCS6D01G270800.1 | Wheat | plasma membrane | 44.66 | 46.07 |
| TraesCS7D01G387200.1 | Wheat | plasma membrane | 44.44 | 44.54 |
| TraesCS6D01G160400.1 | Wheat | peroxisome | 43.57 | 43.67 |
| TraesCS7D01G507300.1 | Wheat | cytosol, peroxisome, plasma membrane, plastid | 36.82 | 34.42 |
| KRG90323 | Soybean | plasma membrane, vacuole | 16.99 | 26.8 |
Protein Annotations
| EnsemblPlants:TraesCS3D01G340400.1 | EnsemblPlantsGene:TraesCS3D01G340400 | InterPro:AA_transpt_TM | PANTHER:PTHR22950 | PANTHER:PTHR22950:SF323 | PFAM:PF01490 |
| SEG:seg | TMHMM:TMhelix | MapMan:24.2.3.4.7 | : | : | : |
Description
No Description!
Coordinates
chr3D:-:454150508..454152489
Molecular Weight (calculated)
47993.4 Da
IEP (calculated)
8.758
GRAVY (calculated)
0.791
Length
459 amino acids
Sequence
(BLAST)
(BLAST)
001: MVSKSSRGPG MTAGGSEAEE ALLLPEHEVG DPAGAAPGNA SVLGAVFNVS TSVVGAGIMS IPAAMRVLGV APALALIVGV ALLANVAVDF MLRYTRGTPS
101: YAALMGGSFG RAGAKLLNVF IAFNCVGTLT VYLIIIGDVM SGPVGSGEAH AGVLPEWFGP HWWTGRDAVL VAAAVILLPL VLQKHVDSLR YTSAVSILLA
201: AVFMLITMGI AVYTVFTGTA KMPRMLPDFS TLASPFELFT AVPVIVVAFT FHFNVHPIRA ELSKTSDMKS AVRISLVLCA AIYAAVGFFG FLLFGDATMP
301: DVLANFDRSS GSGVPQALND AARLSYALHL VLVFPLLHYS LRVNVDELLF PGRRPLAADT RRFVALTAVL MGLLYALAIA IPSIWTLFQY SGSTFAVCIS
401: LIFPGAIVLR DVHGIAKRND KAMAAMMITL AVITSSIAIA SNVMSSIKGE VKGVSAGAS
101: YAALMGGSFG RAGAKLLNVF IAFNCVGTLT VYLIIIGDVM SGPVGSGEAH AGVLPEWFGP HWWTGRDAVL VAAAVILLPL VLQKHVDSLR YTSAVSILLA
201: AVFMLITMGI AVYTVFTGTA KMPRMLPDFS TLASPFELFT AVPVIVVAFT FHFNVHPIRA ELSKTSDMKS AVRISLVLCA AIYAAVGFFG FLLFGDATMP
301: DVLANFDRSS GSGVPQALND AARLSYALHL VLVFPLLHYS LRVNVDELLF PGRRPLAADT RRFVALTAVL MGLLYALAIA IPSIWTLFQY SGSTFAVCIS
401: LIFPGAIVLR DVHGIAKRND KAMAAMMITL AVITSSIAIA SNVMSSIKGE VKGVSAGAS
001: MTPQIKTHLL PKQEPSSSEN HGSSTSGIVF NVSTSIIGAG IMSMPAAFKV LGIVPAFLII TIIAWLSTIS VGFLMKSTLA GESTTYAGVM KESFGKTGSI
101: AVQIATMVAT FGCMIIFSII IGDVLSGNEN GGPEHIGVLQ EWFGSYWWNT RIFALLFVYG FVLLPLVLRR RVERLAISSA VSFLLAVLFV VISSVLAISA
201: LVNGQTKNPR LFPELSNGGS FWQLFTASPV IVTAFTFHFN VHPIGFELKD PLQVIPATKI SVILCAAIYF ATGLFGYLLF GDATMSDILV NFDQSSGSSI
301: GSLLNDIVRL SYVLHLMLVF PLLNFSLRAN LDELLYPKKP SLEKDTKRFI GLTLALLICC FLSAIAVPDI WYFFQFMGST ITVSIAFIFP AAIVLRNIHG
401: VSTSREKIVA AIMLVLAVAT SIIAISTNLY SLAAN
101: AVQIATMVAT FGCMIIFSII IGDVLSGNEN GGPEHIGVLQ EWFGSYWWNT RIFALLFVYG FVLLPLVLRR RVERLAISSA VSFLLAVLFV VISSVLAISA
201: LVNGQTKNPR LFPELSNGGS FWQLFTASPV IVTAFTFHFN VHPIGFELKD PLQVIPATKI SVILCAAIYF ATGLFGYLLF GDATMSDILV NFDQSSGSSI
301: GSLLNDIVRL SYVLHLMLVF PLLNFSLRAN LDELLYPKKP SLEKDTKRFI GLTLALLICC FLSAIAVPDI WYFFQFMGST ITVSIAFIFP AAIVLRNIHG
401: VSTSREKIVA AIMLVLAVAT SIIAISTNLY SLAAN
Arabidopsis Description
AVT6CAmino acid transporter AVT6C [Source:UniProtKB/Swiss-Prot;Acc:Q9LYM2]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.