Factsheet for TraesCS6D01G160400.1

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome

Predictor Summary:

peroxisome 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 2
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	peroxisome
Any Predictor:	peroxisome, plasma membrane
MultiLoc:	peroxisome
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6B01G198900.1	Wheat	peroxisome	99.13	99.13
HORVU6Hr1G034900.1	Barley	peroxisome	98.69	98.47
TraesCS6A01G170700.1	Wheat	plasma membrane	98.03	98.03
Os02t0191300-01	Rice	cytosol, peroxisome, plasma membrane	89.3	89.11
KXG29680	Sorghum	plasma membrane	85.37	85.93
Zm00001d015658_P001	Maize	plasma membrane	83.62	84.92
TraesCS7D01G387200.1	Wheat	plasma membrane	84.28	84.28
TraesCS7D01G213900.1	Wheat	plasma membrane	65.5	65.08
TraesCS6D01G270800.1	Wheat	plasma membrane	62.01	63.82
VIT_14s0083g00740.t01	Wine grape	plasma membrane	63.76	63.2
Solyc02g089400.2.1	Tomato	plasma membrane	63.1	62.83
PGSC0003DMT400068294	Potato	plasma membrane	62.88	62.2
CDY35776	Canola	plasma membrane	62.01	62.01
Bra020737.1-P	Field mustard	plasma membrane	62.01	61.87
Solyc02g065680.2.1	Tomato	plasma membrane	62.45	61.77
CDY45907	Canola	plasma membrane	62.01	61.74
KRH01440	Soybean	plasma membrane	62.66	61.72
KRH45158	Soybean	plasma membrane	62.66	61.59
KRG93742	Soybean	plasma membrane	62.23	61.56
CDX74504	Canola	plasma membrane	43.45	61.23
CDY37894	Canola	plasma membrane	60.48	61.15
AT3G30390.2	Thale cress	plasma membrane	61.35	61.09
CDX86347	Canola	plasma membrane	61.14	60.87
Bra025416.1-P	Field mustard	mitochondrion, peroxisome, plasma membrane	61.14	60.87
CDX85291	Canola	mitochondrion, peroxisome, plasma membrane	61.14	60.61
AT5G38820.2	Thale cress	plasma membrane	60.48	60.09
KRH18319	Soybean	plasma membrane	60.48	59.57
KRG93745	Soybean	plasma membrane	60.26	59.48
Bra036198.1-P	Field mustard	plasma membrane	58.95	59.21
CDY00078	Canola	plasma membrane	59.17	59.17
CDY67720	Canola	plasma membrane	59.17	59.17
PGSC0003DMT400003740	Potato	plasma membrane	62.01	58.92
Bra014071.1-P	Field mustard	plasma membrane	55.46	56.82
CDY17030	Canola	plasma membrane	55.24	56.1
CDY47589	Canola	plasma membrane	54.59	55.31
KRH54971	Soybean	plasma membrane	55.9	54.47
CDY49071	Canola	plasma membrane	50.87	53.08
CDX67416	Canola	plasma membrane	50.44	52.5
Bra028420.1-P	Field mustard	plasma membrane	50.22	52.27
TraesCS3D01G340400.1	Wheat	plasma membrane	43.67	43.57
TraesCS7D01G507300.1	Wheat	cytosol, peroxisome, plasma membrane, plastid	38.43	35.85

Protein Annotations

EnsemblPlants:TraesCS6D01G160400.1	EnsemblPlantsGene:TraesCS6D01G160400	InterPro:AA_transpt_TM	PANTHER:PTHR22950	PANTHER:PTHR22950:SF239	PFAM:PF01490
SEG:seg	TMHMM:TMhelix	MapMan:24.2.3.4.7	:	:	:

Description

No Description!

Coordinates

chr6D:+:138894350..138897565

Molecular Weight (calculated)

50245.7 Da

IEP (calculated)

6.318

GRAVY (calculated)

0.659

Length

458 amino acids

Sequence
(BLAST)

001: MGIGDASPSE NQSAHKEKRD ETTPLLPLKA EEEDGIHEFN GASFSGAVFN LSTTIVGAGI MALPASIKML GIIPGILMII LVALLTEASI DMMVRCSHQA
101: KITSYGWLMG DSFGQWGRIV LQASVVINNI GVMIVYMIII SDVLSGTSTT GVHHRGIFEG WFGPHLWNSR PVVLLATTIF VFAPLVSFKR LDSLRYTSAL
201: SVALAVVFVV ITAGIAILRL IEGTAEIPKL FPEIHEINSI WELFTAVPVL VTAYICHYNV HSIDNELEDR SQTKPIVRTS LALCSSVYVA TSFFAYLLFG
301: EGTLSDVLAN FDSDLHIPFS SVFNDIVRVS YVVHVMLVFP IVFFALRLNL DGLLFPTSRH ISHDNRRFTI ITVSLLVVIY LAANFIPSIW DAFQFTGATA
401: AVLIGFIFPA MIILRDSYGI ATKRDKVLAV TMIVLAVLSN SVALYSDAMS IFYRKVEA

Best Arabidopsis Sequence Match ( AT3G30390.1 )
(BLAST)

001: MTVVGDVAPI PRRNSSTCSN DIAAPLLPEC HGDEVAHDEF NGASFSGAVF NLATTIIGAG IMALPATMKI LGLGLGITMI VVMAFLTDAS IEFLLRFSKA
101: GKNRSYGGLM GGSFGNPGRI LLQVAVLVNN IGVLIVYMII IGDVLAGKTE DGIHHFGVLE GWFGHHWWNG RAAILLITTL GVFAPLACFK RIDSLKFTSA
201: LSVALAVVFL IITAGISIMK LISGGVAMPR LLPDVTDLTS FWNLFTVVPV LVTAFICHYN VHSIQNELED PSQIRPVVRS ALMLCSSVYI MTSIFGFLLF
301: GDDTLDDVLA NFDTDLGIPF GSILNDAVRV SYALHLMLVF PIVFYPLRIN IDGLLFPSAR SLSTSNVRFG CLTAGLISVI FLGANFIPSI WDAFQFTGAT
401: AAVCLGFIFP ASIILKDRHD KATNRDTTLA IFMIVLAVLS NAIAIYSDAY ALFKKNAPRE

Arabidopsis Description

AVT6AAmino acid transporter AVT6A [Source:UniProtKB/Swiss-Prot;Acc:Q9LI61]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.