Factsheet for TraesCS6A01G170700.1

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plasma membrane 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
golgi 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	peroxisome, plasma membrane
MultiLoc:	plasma membrane
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6B01G198900.1	Wheat	peroxisome	98.91	98.91
TraesCS6D01G160400.1	Wheat	peroxisome	98.03	98.03
HORVU6Hr1G034900.1	Barley	peroxisome	97.6	97.39
Os02t0191300-01	Rice	cytosol, peroxisome, plasma membrane	89.52	89.32
KXG29680	Sorghum	plasma membrane	86.03	86.59
Zm00001d015658_P001	Maize	plasma membrane	84.28	85.59
TraesCS7A01G391600.1	Wheat	plasma membrane	84.72	84.72
TraesCS7A01G212200.2	Wheat	plasma membrane	66.38	65.94
VIT_14s0083g00740.t01	Wine grape	plasma membrane	63.97	63.42
Solyc02g089400.2.1	Tomato	plasma membrane	63.54	63.26
TraesCS6A01G288200.1	Wheat	plasma membrane	61.79	63.17
CDY35776	Canola	plasma membrane	62.23	62.23
PGSC0003DMT400068294	Potato	plasma membrane	62.88	62.2
Bra020737.1-P	Field mustard	plasma membrane	62.23	62.09
CDY45907	Canola	plasma membrane	62.23	61.96
CDX74504	Canola	plasma membrane	43.89	61.85
Solyc02g065680.2.1	Tomato	plasma membrane	62.45	61.77
KRH01440	Soybean	plasma membrane	62.66	61.72
KRH45158	Soybean	plasma membrane	62.66	61.59
KRG93742	Soybean	plasma membrane	62.23	61.56
CDY37894	Canola	plasma membrane	60.7	61.37
AT3G30390.2	Thale cress	plasma membrane	61.57	61.3
Bra025416.1-P	Field mustard	mitochondrion, peroxisome, plasma membrane	61.35	61.09
CDX86347	Canola	plasma membrane	61.35	61.09
CDX85291	Canola	mitochondrion, peroxisome, plasma membrane	61.35	60.82
AT5G38820.2	Thale cress	plasma membrane	60.92	60.52
Bra036198.1-P	Field mustard	plasma membrane	59.17	59.43
CDY00078	Canola	plasma membrane	59.39	59.39
CDY67720	Canola	plasma membrane	59.39	59.39
KRH18319	Soybean	plasma membrane	60.26	59.35
PGSC0003DMT400003740	Potato	plasma membrane	62.45	59.34
KRG93745	Soybean	plasma membrane	60.04	59.27
Bra014071.1-P	Field mustard	plasma membrane	55.68	57.05
CDY17030	Canola	plasma membrane	55.9	56.76
CDY47589	Canola	plasma membrane	55.24	55.97
KRH54971	Soybean	plasma membrane	56.33	54.89
CDY49071	Canola	plasma membrane	51.09	53.3
CDX67416	Canola	plasma membrane	50.87	52.95
Bra028420.1-P	Field mustard	plasma membrane	50.66	52.73
TraesCS3A01G346700.1	Wheat	plasma membrane	44.54	44.44
TraesCS7A01G517100.1	Wheat	cytosol, peroxisome, plasma membrane, plastid	38.86	36.63

Protein Annotations

EnsemblPlants:TraesCS6A01G170700.1	EnsemblPlantsGene:TraesCS6A01G170700	InterPro:AA_transpt_TM	PANTHER:PTHR22950	PANTHER:PTHR22950:SF239	PFAM:PF01490
SEG:seg	TMHMM:TMhelix	MapMan:24.2.3.4.7	:	:	:

Description

No Description!

Coordinates

chr6A:+:181508546..181510838

Molecular Weight (calculated)

50177.6 Da

IEP (calculated)

6.183

GRAVY (calculated)

0.658

Length

458 amino acids

Sequence
(BLAST)

001: MGIGDASPSE NQSAHKEQRD ETTPLLPVKA EEEDGIHEFN GASFSGAVFN LSTTIVGAGI MALPASIKML GIIPGILMII LVALLTEASI DMMVRCSHQA
101: KITSYGWLMG DSFGQWGRIA LQASVVINNV GVMIVYMIII GDVLSGTSTT GVHHRGIFEG WFGPHFWNSR PVVLLATTIF VFAPLVSFKR LDSLRYTSAL
201: SVALAVVFVV ITAGIAILRL IEGTAEIPKL FPEIHELNSI WELFTAVPVL VTAYICHYNV HSIDNELEDR SQTKPIVRTS LALCSSVYVA TSFFAYLLFG
301: EGTLSDVLAN FDSDLHIPFS SVFNDIVRVS YVVHVMLVFP IVFFALRLNL DGLLFPTSRH ISHDNRRFII ITVSLLAVIY LAANFIPSIW DAFQFTGATA
401: AVLIGFIFPA MIILRDSYGI ATKRDKVLAV TMIVLAVLSN SVALYSDAMS IFYRKVEA

Best Arabidopsis Sequence Match ( AT5G38820.1 )
(BLAST)

001: MENLDEIRTD IVESTAPLLQ ESSSESNGGG EFNGASFSGA VFNLATTIIG AGIMALPATM KILGLIPGIT IIVLMAFLTD ASIEFLLRFS NIGNQRSYGG
101: VMDDSFGKCG RIMLQVSILV SNIGVLIVYM IIIGDVLAGK NEYGIHHAGM LEGWFGISWW NRRTFVLLVT TLTVFAPLTC FKRIDSLRFT SAISVALAVV
201: FLVITAGITI IKLFTDGLMM PRLLPNVTDL SSFWKLFTVV PVLVNAYICH YNVHSIQNEL EDPSRIKPVV RSALAMCSSV YVMTSLFGYL LFGDGTLDDV
301: LANFDTDLGI PFGSVLNDAV RFSYAAHLML VFPVVFYPLR INIDGLIFPT APPLTSSESD LRFGSITAGL IAVIFLGANF IPSIWDAFQF TGATAAVCIG
401: FIFPAAVILK DRHNQATKRD KTIAICMIVL AVFSNAIAIY SDAYALFKKH TYVYPI

Arabidopsis Description

SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.