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Tomato
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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane

Predictor Summary:
  • nucleus 1
  • plasma membrane 3
  • plastid 1
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • golgi 1
  • peroxisome 1
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane
Any Predictor:nucleus, peroxisome, plastid, secretory
BaCelLo:nucleus
MultiLoc:plasma membrane
Plant-mPloc:plastid
PProwler:secretory
WoLF PSORT:plasma membrane
YLoc:peroxisome
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400003740 Potato plasma membrane 95.87 91.49
Solyc02g065680.2.1 Tomato plasma membrane 85.43 84.88
VIT_14s0083g00740.t01 Wine grape plasma membrane 80.43 80.09
KRH01440 Soybean plasma membrane 74.13 73.33
Bra025416.1-P Field mustard mitochondrion, peroxisome, plasma membrane 73.04 73.04
CDX86347 Canola plasma membrane 73.04 73.04
KRH45158 Soybean plasma membrane 73.91 72.96
CDY35776 Canola plasma membrane 72.61 72.93
CDY45907 Canola plasma membrane 72.83 72.83
Bra020737.1-P Field mustard plasma membrane 72.39 72.55
CDX85291 Canola mitochondrion, peroxisome, plasma membrane 72.83 72.51
AT3G30390.2 Thale cress plasma membrane 72.39 72.39
Bra036198.1-P Field mustard plasma membrane 71.09 71.71
CDY67720 Canola plasma membrane 71.3 71.62
KRG93742 Soybean plasma membrane 71.74 71.27
CDY00078 Canola plasma membrane 70.87 71.18
CDX74504 Canola plasma membrane 50.0 70.77
GSMUA_Achr7P20080_001 Banana extracellular, plasma membrane, vacuole 61.52 70.57
AT5G38820.2 Thale cress plasma membrane 70.65 70.5
CDY37894 Canola plasma membrane 68.7 69.76
KRH18319 Soybean plasma membrane 69.57 68.82
KRG93745 Soybean plasma membrane 68.91 68.32
GSMUA_Achr8P24480_001 Banana cytosol, golgi, plasma membrane 68.7 68.25
TraesCS7A01G212200.2 Wheat plasma membrane 68.04 67.9
TraesCS7D01G213900.1 Wheat plasma membrane 67.83 67.68
TraesCS7B01G119000.2 Wheat plasma membrane 67.83 67.68
Os06t0275800-01 Rice plasma membrane 65.87 67.63
HORVU7Hr1G065280.2 Barley plasma membrane 67.83 67.53
EER88229 Sorghum plasma membrane 66.09 66.23
TraesCS7B01G293500.3 Wheat plasma membrane 65.43 65.72
TraesCS7D01G387200.1 Wheat plasma membrane 65.43 65.72
TraesCS7A01G391600.1 Wheat plasma membrane 65.22 65.5
HORVU0Hr1G020180.1 Barley cytosol, plasma membrane 24.35 65.5
Bra014071.1-P Field mustard plasma membrane 63.48 65.32
Os06t0633800-01 Rice peroxisome 65.0 65.28
Solyc04g077460.2.1 Tomato plasma membrane 63.91 65.19
Os02t0727100-01 Rice plasma membrane 63.04 64.73
EER88687 Sorghum cytosol, peroxisome, plasma membrane 64.57 64.71
Zm00001d015658_P001 Maize plasma membrane 63.26 64.52
TraesCS6D01G270800.1 Wheat plasma membrane 62.39 64.49
TraesCS6B01G317700.1 Wheat plasma membrane 62.39 64.49
KXG29680 Sorghum plasma membrane 63.7 64.4
HORVU6Hr1G072350.1 Barley plasma membrane 62.61 64.29
TraesCS6A01G288200.1 Wheat plasma membrane 62.61 64.29
CDY17030 Canola plasma membrane 62.61 63.86
TraesCS6A01G170700.1 Wheat plasma membrane 63.26 63.54
HORVU6Hr1G034900.1 Barley peroxisome 63.26 63.4
Os02t0191300-01 Rice cytosol, peroxisome, plasma membrane 63.26 63.4
TraesCS6B01G198900.1 Wheat peroxisome 63.04 63.32
TraesCS6D01G160400.1 Wheat peroxisome 62.83 63.1
Zm00001d046661_P003 Maize golgi, peroxisome, plasma membrane 64.78 62.74
CDY47589 Canola plasma membrane 61.09 62.17
CDY49071 Canola plasma membrane 58.91 61.73
CDX67416 Canola plasma membrane 58.48 61.14
Bra028420.1-P Field mustard plasma membrane 57.83 60.45
Zm00001d051703_P001 Maize plasma membrane 64.13 60.45
HORVU7Hr1G092550.1 Barley cytosol 63.7 56.56
Solyc09g059850.1.1 Tomato endoplasmic reticulum, extracellular, vacuole 13.91 53.33
KXG30838 Sorghum plasma membrane 63.7 52.89
Zm00001d045740_P001 Maize plasma membrane 66.3 52.68
Solyc05g052300.2.1 Tomato cytosol, peroxisome, plasma membrane 44.78 47.03
Solyc09g059880.1.1 Tomato extracellular 11.52 45.69
HORVU0Hr1G020160.1 Barley golgi, mitochondrion 28.7 45.36
Solyc06g050790.2.1 Tomato plasma membrane 42.39 44.83
Solyc06g050800.2.1 Tomato plasma membrane 40.65 42.69
Solyc03g117350.1.1 Tomato plasma membrane 42.39 41.31
Protein Annotations
EnsemblPlants:Solyc02g089400.2.1EnsemblPlantsGene:Solyc02g089400.2GO:GO:0003333GO:GO:0003674GO:GO:0005215GO:GO:0005575
GO:GO:0006810GO:GO:0008150GO:GO:0015171GO:GO:0016020GO:GO:0016021InterPro:AA_transpt_TM
PANTHER:PTHR22950PANTHER:PTHR22950:SF292PFAM:PF01490SEG:segTMHMM:TMhelixUniParc:UPI0002768A91
UniProt:K4BC91MapMan:24.2.3.4.7::::
Description
No Description!
Coordinates
chr2:-:51230438..51234513
Molecular Weight (calculated)
49952.9 Da
IEP (calculated)
8.122
GRAVY (calculated)
0.730
Length
460 amino acids
Sequence
(BLAST)
001: MTIGTVKEKK SRKNKQPVVD DQSPLLPTKH QKDGGFDEFN GASYSGAVFN LSTTIVGAGI MALPAIMKVL GLIPGIIMII LMAFLTEASI ELLIRFSRTS
101: NSVSYGGLMG DAFGNYGKML LQICVLVNNI GVLIVYMIII GDVLSGTTSS GTHHAGVLEG WFGVHWWNGR FFVLLVTTLG VFAPLACLKR IDSLRYTSAL
201: SVALAVVFLV VTVGITIFKL INGSILMPRL LPSCHDLTSF LKLFTVVPVL VTAYICHYNV HSIENELEES RQIRAVVQSA LALCSSVYVL TSIFGFLLFG
301: DATLDDVLAN FDADLGIPFG SLLNDVVRVS YAAHLMLVFP IVFYPLRLNL DGLVFPSASP LTLDNLRFAL ISGGLIAIIF LGANFIPSIW DAFQFTGATA
401: AVCIGFIFPA AVTLRDRYGI ATKRDKILSI FMIVLAVFSN MVAIYSDAYA LFKKNSSPRE
Best Arabidopsis Sequence Match ( AT3G30390.1 )
(BLAST)
001: MTVVGDVAPI PRRNSSTCSN DIAAPLLPEC HGDEVAHDEF NGASFSGAVF NLATTIIGAG IMALPATMKI LGLGLGITMI VVMAFLTDAS IEFLLRFSKA
101: GKNRSYGGLM GGSFGNPGRI LLQVAVLVNN IGVLIVYMII IGDVLAGKTE DGIHHFGVLE GWFGHHWWNG RAAILLITTL GVFAPLACFK RIDSLKFTSA
201: LSVALAVVFL IITAGISIMK LISGGVAMPR LLPDVTDLTS FWNLFTVVPV LVTAFICHYN VHSIQNELED PSQIRPVVRS ALMLCSSVYI MTSIFGFLLF
301: GDDTLDDVLA NFDTDLGIPF GSILNDAVRV SYALHLMLVF PIVFYPLRIN IDGLLFPSAR SLSTSNVRFG CLTAGLISVI FLGANFIPSI WDAFQFTGAT
401: AAVCLGFIFP ASIILKDRHD KATNRDTTLA IFMIVLAVLS NAIAIYSDAY ALFKKNAPRE
Arabidopsis Description
AVT6AAmino acid transporter AVT6A [Source:UniProtKB/Swiss-Prot;Acc:Q9LI61]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.