Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- extracellular 7
- endoplasmic reticulum 5
- vacuole 5
- plasma membrane 7
- golgi 5
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400012670 | Potato | plasma membrane | 61.21 | 17.84 |
| Solyc04g077460.2.1 | Tomato | plasma membrane | 62.07 | 15.96 |
| VIT_18s0001g08570.t01 | Wine grape | mitochondrion, plasma membrane | 54.31 | 14.03 |
| Solyc02g089400.2.1 | Tomato | plasma membrane | 45.69 | 11.52 |
| KRH15469 | Soybean | plasma membrane | 43.97 | 11.26 |
| Solyc02g065680.2.1 | Tomato | plasma membrane | 42.24 | 10.58 |
| Solyc09g059850.1.1 | Tomato | endoplasmic reticulum, extracellular, vacuole | 9.48 | 9.17 |
| Solyc06g050790.2.1 | Tomato | plasma membrane | 31.03 | 8.28 |
| Solyc05g052300.2.1 | Tomato | cytosol, peroxisome, plasma membrane | 31.03 | 8.22 |
| Solyc06g050800.2.1 | Tomato | plasma membrane | 31.03 | 8.22 |
| Solyc03g117350.1.1 | Tomato | plasma membrane | 32.76 | 8.05 |
Protein Annotations
| EnsemblPlants:Solyc09g059880.1.1 | EnsemblPlantsGene:Solyc09g059880.1 | GO:GO:0003333 | GO:GO:0003674 | GO:GO:0005215 | GO:GO:0005575 |
| GO:GO:0006810 | GO:GO:0008150 | GO:GO:0015171 | GO:GO:0016020 | GO:GO:0016021 | PANTHER:PTHR22950 |
| PANTHER:PTHR22950:SF334 | SEG:seg | TMHMM:TMhelix | UniParc:UPI000276B93C | UniProt:K4CTS2 | MapMan:35.2 |
Description
No Description!
Coordinates
chr9:+:56307952..56308505
Molecular Weight (calculated)
12972.0 Da
IEP (calculated)
6.752
GRAVY (calculated)
0.887
Length
116 amino acids
Sequence
(BLAST)
(BLAST)
001: MYSPTLMVNL KFLTAHYLLM WCQFLSIIAT LVCLIFFGEN CVPKIWDAFH FTGATTTVFV GFVYSATIVL RDTHGIATNR DRLFSSVMIL LVVSPSSVAI
101: CSDIYNLFNN AVDVGF
101: CSDIYNLFNN AVDVGF
001: MISGSMENLD EIRTDIVEST APLLQESSSE SNGGGEFNGA SFSGAVFNLA TTIIGAGIMA LPATMKILGL IPGITIIVLM AFLTDASIEF LLRFSNIGNQ
101: RSYGGVMDDS FGKCGRIMLQ VSILVSNIGV LIVYMIIIGD VLAGKNEYGI HHAGMLEGWF GISWWNRRTF VLLVTTLTVF APLTCFKRID SLRFTSAISV
201: ALAVVFLVIT AGITIIKLFT DGLMMPRLLP NVTDLSSFWK LFTVVPVLVN AYICHYNVHS IQNELEDPSR IKPVVRSALA MCSSVYVMTS LFGYLLFGDG
301: TLDDVLANFD TDLGIPFGSV LNDAVRFSYA AHLMLVFPVV FYPLRINIDG LIFPTAPPLT SSESDLRFGS ITAGLIAVIF LGANFIPSIW DAFQFTGATA
401: AVCIGFIFPA AVILKDRHNQ ATKRDKTIAI CMIVLAVFSN AIAIYSDAYA LFKKHTYVYP I
101: RSYGGVMDDS FGKCGRIMLQ VSILVSNIGV LIVYMIIIGD VLAGKNEYGI HHAGMLEGWF GISWWNRRTF VLLVTTLTVF APLTCFKRID SLRFTSAISV
201: ALAVVFLVIT AGITIIKLFT DGLMMPRLLP NVTDLSSFWK LFTVVPVLVN AYICHYNVHS IQNELEDPSR IKPVVRSALA MCSSVYVMTS LFGYLLFGDG
301: TLDDVLANFD TDLGIPFGSV LNDAVRFSYA AHLMLVFPVV FYPLRINIDG LIFPTAPPLT SSESDLRFGS ITAGLIAVIF LGANFIPSIW DAFQFTGATA
401: AVCIGFIFPA AVILKDRHNQ ATKRDKTIAI CMIVLAVFSN AIAIYSDAYA LFKKHTYVYP I
Arabidopsis Description
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.