Factsheet for Solyc05g052300.2.1

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, cytosol, plasma membrane

Predictor Summary:

plastid 2
peroxisome 1
plasma membrane 3
golgi 2
cytosol 2
extracellular 1
endoplasmic reticulum 1
vacuole 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, peroxisome, plasma membrane
Any Predictor:	cytosol, peroxisome, plastid, secretory
BaCelLo:	plastid
MultiLoc:	peroxisome
Plant-mPloc:	cytosol, golgi, plasma membrane, plastid
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400030399	Potato	plasma membrane	96.35	96.35
Solyc06g050800.2.1	Tomato	plasma membrane	74.43	74.43
VIT_13s0067g02220.t01	Wine grape	golgi, plasma membrane, plastid, vacuole	68.26	67.49
KRH73226	Soybean	endoplasmic reticulum, plasma membrane, plastid, vacuole	61.64	62.21
KRG97662	Soybean	plastid	61.87	62.16
KRH14877	Soybean	plasma membrane	61.19	62.04
KRH31212	Soybean	plastid	61.42	61.7
CDY27236	Canola	plasma membrane	60.5	61.06
Bra007225.1-P	Field mustard	plasma membrane	59.82	60.37
CDX72159	Canola	plasma membrane	59.59	60.14
CDY27235	Canola	plasma membrane	55.25	59.61
AT3G56200.1	Thale cress	plasma membrane	58.9	59.31
CDY27234	Canola	plasma membrane	58.9	56.83
Solyc06g050790.2.1	Tomato	plasma membrane	56.39	56.78
AT2G40420.1	Thale cress	plastid	55.48	55.23
Bra007226.1-P	Field mustard	plasma membrane	52.51	55.02
CDY52929	Canola	plastid	55.48	54.61
Bra017005.1-P	Field mustard	plastid	55.25	54.5
CDY66186	Canola	plasma membrane, plastid	55.48	53.41
Os01t0825800-01	Rice	plasma membrane	54.11	51.97
GSMUA_Achr7P22240_001	Banana	cytosol, endoplasmic reticulum, plasma membrane	52.74	51.22
TraesCS3B01G378500.1	Wheat	plasma membrane	53.2	50.87
HORVU3Hr1G088360.1	Barley	peroxisome, plasma membrane	54.34	50.85
TraesCS3A01G346700.1	Wheat	plasma membrane	53.2	50.76
KXG33635	Sorghum	plasma membrane	53.65	50.54
TraesCS3D01G340400.1	Wheat	plasma membrane	52.74	50.33
HORVU3Hr1G045630.2	Barley	plastid	53.42	49.16
Solyc04g077460.2.1	Tomato	plasma membrane	46.35	45.01
Solyc02g089400.2.1	Tomato	plasma membrane	47.03	44.78
Solyc02g065680.2.1	Tomato	plasma membrane	45.43	42.98
Solyc09g059850.1.1	Tomato	endoplasmic reticulum, extracellular, vacuole	10.73	39.17
Solyc03g117350.1.1	Tomato	plasma membrane	38.13	35.38
Zm00001d012485_P001	Maize	golgi, plasma membrane, plastid	53.42	35.14
Solyc09g059880.1.1	Tomato	extracellular	8.22	31.03
Zm00001d030531_P001	Maize	extracellular, plasma membrane, vacuole	12.79	30.43

Protein Annotations

EnsemblPlants:Solyc05g052300.2.1	EnsemblPlantsGene:Solyc05g052300.2	GO:GO:0003333	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575
GO:GO:0006810	GO:GO:0008150	GO:GO:0015171	GO:GO:0016020	GO:GO:0016021	InterPro:AA_transpt_TM
PANTHER:PTHR22950	PANTHER:PTHR22950:SF323	PFAM:PF01490	SEG:seg	TMHMM:TMhelix	UniParc:UPI0002765D02
UniProt:K4C1R1	MapMan:24.2.3.4.7	:	:	:	:

Description

No Description!

Coordinates

chr5:-:62572297..62574448

Molecular Weight (calculated)

48195.5 Da

IEP (calculated)

7.831

GRAVY (calculated)

0.939

Length

438 amino acids

Sequence
(BLAST)

001: MALAKNGAEI PLLPQTEQTL FTRENQQLIL RAVFNVSTSI IGAGIMSVPA TLKVLGVIPA FVLIILVALL VDISVDFMLR FTYRGESKTY AALMNESFGE
101: IGSVAVQICV MITNLGCLIM YLIIIGDVLS GQGEHLGVLQ EWFGIHWWNS RNFAILFIVL FVMLPLVLYR RIESLWLSSA LAVLLAIVFV VICSVMAITA
201: ILKGQTVTPR MLPKMDDETS FFNLFTAVPV IVTAFTFHFN VHPIATELGK PAAMSSAVKI SLVLCAAIYF SIGIFGYLLF GDSIMPDILV NFDKSSGTSA
301: ISSMLNDIVR LSYAFHLMLV FPLLNFSLRA NLDELVFPKM PFLATDTKRF VCLSLVLLAF SYLAAIFIPS IWYIFQFTGT TTGVCIAFIF PGAIALRDVH
401: GISSRKDKII AVIMIVQAVV TSFVTIATNI YNMSGNRL

Best Arabidopsis Sequence Match ( AT3G56200.1 )
(BLAST)

001: MTPQIKTHLL PKQEPSSSEN HGSSTSGIVF NVSTSIIGAG IMSMPAAFKV LGIVPAFLII TIIAWLSTIS VGFLMKSTLA GESTTYAGVM KESFGKTGSI
101: AVQIATMVAT FGCMIIFSII IGDVLSGNEN GGPEHIGVLQ EWFGSYWWNT RIFALLFVYG FVLLPLVLRR RVERLAISSA VSFLLAVLFV VISSVLAISA
201: LVNGQTKNPR LFPELSNGGS FWQLFTASPV IVTAFTFHFN VHPIGFELKD PLQVIPATKI SVILCAAIYF ATGLFGYLLF GDATMSDILV NFDQSSGSSI
301: GSLLNDIVRL SYVLHLMLVF PLLNFSLRAN LDELLYPKKP SLEKDTKRFI GLTLALLICC FLSAIAVPDI WYFFQFMGST ITVSIAFIFP AAIVLRNIHG
401: VSTSREKIVA AIMLVLAVAT SIIAISTNLY SLAAN

Arabidopsis Description

AVT6CAmino acid transporter AVT6C [Source:UniProtKB/Swiss-Prot;Acc:Q9LYM2]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.