CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 3
endoplasmic reticulum 2
extracellular 1
vacuole 1
plasma membrane 3
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	endoplasmic reticulum, plasma membrane, plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	endoplasmic reticulum
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY27235	Canola	plasma membrane	86.56	96.8
CDY27236	Canola	plasma membrane	87.44	91.47
CDX72159	Canola	plasma membrane	87.0	91.01
Bra007226.1-P	Field mustard	plasma membrane	80.62	87.56
AT3G56200.1	Thale cress	plasma membrane	81.5	85.06
CDY52929	Canola	plastid	72.03	73.48
CDY66186	Canola	plasma membrane, plastid	72.03	71.87
VIT_13s0067g02220.t01	Wine grape	golgi, plasma membrane, plastid, vacuole	58.81	60.27
KRH14877	Soybean	plasma membrane	56.61	59.49
KRH73226	Soybean	endoplasmic reticulum, plasma membrane, plastid, vacuole	56.61	59.22
KRG97662	Soybean	plastid	56.61	58.95
PGSC0003DMT400030399	Potato	plasma membrane	56.83	58.9
Solyc05g052300.2.1	Tomato	cytosol, peroxisome, plasma membrane	56.83	58.9
KRH31212	Soybean	plastid	56.39	58.72
PGSC0003DMT400074952	Potato	plasma membrane	54.41	56.14
Solyc06g050800.2.1	Tomato	plasma membrane	53.96	55.94
GSMUA_Achr7P22240_001	Banana	cytosol, endoplasmic reticulum, plasma membrane	50.44	50.78
Os01t0825800-01	Rice	plasma membrane	50.88	50.66
HORVU3Hr1G088360.1	Barley	peroxisome, plasma membrane	50.0	48.5
KXG33635	Sorghum	plasma membrane	49.34	48.17
TraesCS3B01G378500.1	Wheat	plasma membrane	48.46	48.03
TraesCS3D01G340400.1	Wheat	plasma membrane	48.46	47.93
TraesCS3A01G346700.1	Wheat	plasma membrane	48.24	47.71
HORVU3Hr1G045630.2	Barley	plastid	48.68	46.43
CDX74504	Canola	plasma membrane	31.5	44.0
CDX86347	Canola	plasma membrane	44.27	43.7
CDX85291	Canola	mitochondrion, peroxisome, plasma membrane	44.27	43.51
CDY45907	Canola	plasma membrane	43.17	42.61
CDY35776	Canola	plasma membrane	42.73	42.36
CDY67720	Canola	plasma membrane	42.51	42.14
CDY00078	Canola	plasma membrane	42.51	42.14
CDY37894	Canola	plasma membrane	41.19	41.28
CDY47589	Canola	plasma membrane	39.43	39.6
CDY17030	Canola	plasma membrane	38.99	39.25
CDX67416	Canola	plasma membrane	36.34	37.5
CDY49071	Canola	plasma membrane	35.46	36.67
CDX79381	Canola	plasma membrane	37.22	36.58
CDX67951	Canola	plasma membrane	36.78	35.61
CDX87318	Canola	plasma membrane	36.78	34.5
CDY39969	Canola	plasma membrane	36.56	34.3
CDY37600	Canola	cytosol, peroxisome, plasma membrane	35.68	33.61
CDY38675	Canola	plasma membrane	35.46	33.4
Zm00001d012485_P001	Maize	golgi, plasma membrane, plastid	48.68	33.18
Zm00001d030531_P001	Maize	extracellular, plasma membrane, vacuole	13.0	32.07

Protein Annotations

EnsemblPlants:CDY27234	EnsemblPlantsGene:GSBRNA2T00037108001	GO:A0A078GPS3	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:AA_transpt_TM	PANTHER:PTHR22950	PANTHER:PTHR22950:SF323	PFAM:PF01490	ProteinID:CDY27234	ProteinID:CDY27234.1
SEG:seg	TMHMM:TMhelix	UniParc:UPI0004EEE7E6	UniProt:A0A078GPS3	MapMan:24.2.3.4.7	:

Description

BnaA09g35680DBnaA09g35680D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GPS3]

Coordinates

chrLK032201:-:284729..286990

Molecular Weight (calculated)

49001.6 Da

IEP (calculated)

8.487

GRAVY (calculated)

0.776

Length

454 amino acids

Sequence
(BLAST)

001: MSPPIKTPLL PKQEPSSEKH GTTSGVVFNV STSIIGAGIM SMPAAFKVLG VIPALLIITV VAWLSTVSVG FLMKSTLSGE STTYAGVMKE SFGKLGSVAV
101: QVVIMVSTFG GIVVFSIIIG DVLCGSDNGG SVHLGVLQEW FGSHWWNTRI FALLFTNIFI LLPLVLCRRV ERLAFSSAVS FLLAVFFVVI SSVLAISALM
201: KGQTKSPRLF PDLTNGGSFW NLFTASPVIV TAFTFHFNGE NPSHTHNIQK ITRHLFFGAV HPIGFELKDP LHVIPATKIS VILCAAIYFA TGLFGYLLFG
301: DATMSDILVN FDESSGSSIG SLLNDIVRLS YALHLMLVFP LMNFSLRANL DELMFPTRKP LAEDTNRFIG LTLALLICCF LSAIAVPNIW YFFQFMGSTT
401: TVSIAFIFPA AIVLKNVHGV STSSEKMVAA IMLVLAVATS IIAISTNLYS LTSN

Best Arabidopsis Sequence Match ( AT3G56200.1 )
(BLAST)

001: MTPQIKTHLL PKQEPSSSEN HGSSTSGIVF NVSTSIIGAG IMSMPAAFKV LGIVPAFLII TIIAWLSTIS VGFLMKSTLA GESTTYAGVM KESFGKTGSI
101: AVQIATMVAT FGCMIIFSII IGDVLSGNEN GGPEHIGVLQ EWFGSYWWNT RIFALLFVYG FVLLPLVLRR RVERLAISSA VSFLLAVLFV VISSVLAISA
201: LVNGQTKNPR LFPELSNGGS FWQLFTASPV IVTAFTFHFN VHPIGFELKD PLQVIPATKI SVILCAAIYF ATGLFGYLLF GDATMSDILV NFDQSSGSSI
301: GSLLNDIVRL SYVLHLMLVF PLLNFSLRAN LDELLYPKKP SLEKDTKRFI GLTLALLICC FLSAIAVPDI WYFFQFMGST ITVSIAFIFP AAIVLRNIHG
401: VSTSREKIVA AIMLVLAVAT SIIAISTNLY SLAAN

Arabidopsis Description

AVT6CAmino acid transporter AVT6C [Source:UniProtKB/Swiss-Prot;Acc:Q9LYM2]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.