Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 1
- plasma membrane 3
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- golgi 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX67951 | Canola | plasma membrane | 96.1 | 94.67 |
| AT1G80510.1 | Thale cress | cytosol, peroxisome, plasma membrane | 89.18 | 84.25 |
| CDY37600 | Canola | cytosol, peroxisome, plasma membrane | 87.66 | 84.02 |
| CDY38675 | Canola | plasma membrane | 87.45 | 83.82 |
| CDY39969 | Canola | plasma membrane | 87.23 | 83.26 |
| CDX87318 | Canola | plasma membrane | 86.8 | 82.85 |
| KRH09698 | Soybean | plasma membrane | 69.91 | 77.09 |
| KRH23609 | Soybean | cytosol, peroxisome, plasma membrane | 73.81 | 70.31 |
| PGSC0003DMT400036836 | Potato | plasma membrane | 71.43 | 69.92 |
| VIT_09s0002g08410.t01 | Wine grape | cytosol, peroxisome, plasma membrane | 74.24 | 69.43 |
| Solyc03g117350.1.1 | Tomato | plasma membrane | 70.56 | 69.07 |
| GSMUA_Achr1P15770_001 | Banana | endoplasmic reticulum, peroxisome, plasma membrane | 60.17 | 62.05 |
| TraesCS7A01G517100.1 | Wheat | cytosol, peroxisome, plasma membrane, plastid | 64.72 | 61.52 |
| TraesCS7D01G507300.1 | Wheat | cytosol, peroxisome, plasma membrane, plastid | 65.37 | 61.51 |
| TraesCS7B01G433400.1 | Wheat | cytosol, peroxisome, plasma membrane, plastid | 64.94 | 61.1 |
| Os06t0644700-01 | Rice | cytosol, peroxisome, plasma membrane | 62.99 | 61.01 |
| EER90107 | Sorghum | cytosol, peroxisome, plastid, vacuole | 62.77 | 59.92 |
| Zm00001d046586_P001 | Maize | plasma membrane | 61.69 | 58.52 |
| GSMUA_Achr3P00900_001 | Banana | endoplasmic reticulum, plasma membrane, vacuole | 50.65 | 49.68 |
| HORVU7Hr1G115450.1 | Barley | cytosol, peroxisome, plastid | 64.94 | 46.51 |
| CDY35776 | Canola | plasma membrane | 41.99 | 42.36 |
| CDX86347 | Canola | plasma membrane | 41.99 | 42.17 |
| CDX85291 | Canola | mitochondrion, peroxisome, plasma membrane | 41.99 | 41.99 |
| CDY45907 | Canola | plasma membrane | 41.77 | 41.96 |
| CDY00078 | Canola | plasma membrane | 41.56 | 41.92 |
| CDY67720 | Canola | plasma membrane | 41.13 | 41.48 |
| CDY37894 | Canola | plasma membrane | 39.61 | 40.4 |
| CDX72159 | Canola | plasma membrane | 36.8 | 39.17 |
| CDY27236 | Canola | plasma membrane | 36.58 | 38.94 |
| CDX74504 | Canola | plasma membrane | 27.27 | 38.77 |
| CDY47589 | Canola | plasma membrane | 37.88 | 38.72 |
| CDY27235 | Canola | plasma membrane | 33.98 | 38.67 |
| CDY17030 | Canola | plasma membrane | 37.66 | 38.58 |
| CDX67416 | Canola | plasma membrane | 36.58 | 38.41 |
| CDY49071 | Canola | plasma membrane | 36.36 | 38.27 |
| CDY27234 | Canola | plasma membrane | 36.58 | 37.22 |
| CDY52929 | Canola | plastid | 33.98 | 35.28 |
| CDY66186 | Canola | plasma membrane, plastid | 34.2 | 34.73 |
Protein Annotations
| EnsemblPlants:CDX79381 | EnsemblPlantsGene:GSBRNA2T00132086001 | GO:A0A078CQ98 | InterPro:AA_transpt_TM | PANTHER:PTHR22950 | PANTHER:PTHR22950:SF346 |
| PFAM:PF01490 | ProteinID:CDX79381 | ProteinID:CDX79381.1 | SEG:seg | TMHMM:TMhelix | UniParc:UPI0004EB1C1E |
| MapMan:24.2.3.4.7 | : | : | : | : | : |
Description
BnaC06g19220D
Coordinates
chrLK031817:-:1739163..1740850
Molecular Weight (calculated)
49798.3 Da
IEP (calculated)
6.514
GRAVY (calculated)
0.668
Length
462 amino acids
Sequence
(BLAST)
(BLAST)
001: MDSSYSVISK NSYVELQKQT KFLPLDEERF VNGVRDDLDP DAGSNQGSGI SGAVFNLTTS IIGAGIMALP ATMKVLGLAL GLLLIVLIAV LSEISVELLV
101: RFSSLYKSRS YGEVVQFALG KPARVLSEVC IVVNNGGFLV VYLIIMGDVM SGSLHHVGVL DQWLGNGFWD HRKVLILVVV VVFLAPLCAL NRIDSLSVTS
201: AASVALAVVF VVVCFVVAAV KLVEGSVDAP RMSPDFGSTE AVLDLLVVIP IMTNAYVCHF NVQPIYNELE GRTPEKMNRV GRVTTAVCVV VYASTAVSGY
301: LLFGKDTESD ILTNFDQDLG IRFSSAVNYV VRVGYILHLV LVFPVIHFSL RETVDTLLFE GSPPLSESKK RSLGLTVVLL ALIYIGSTMI PNIWTAFKFT
401: GATSAVSLGF TFPALIALRL GKQSNSLSQV ERSVSWLMLV LAVVVSVVGT LGNIYSLRSK SD
101: RFSSLYKSRS YGEVVQFALG KPARVLSEVC IVVNNGGFLV VYLIIMGDVM SGSLHHVGVL DQWLGNGFWD HRKVLILVVV VVFLAPLCAL NRIDSLSVTS
201: AASVALAVVF VVVCFVVAAV KLVEGSVDAP RMSPDFGSTE AVLDLLVVIP IMTNAYVCHF NVQPIYNELE GRTPEKMNRV GRVTTAVCVV VYASTAVSGY
301: LLFGKDTESD ILTNFDQDLG IRFSSAVNYV VRVGYILHLV LVFPVIHFSL RETVDTLLFE GSPPLSESKK RSLGLTVVLL ALIYIGSTMI PNIWTAFKFT
401: GATSAVSLGF TFPALIALRL GKQSNSLSQV ERSVSWLMLV LAVVVSVVGT LGNIYSLRSK SD
001: MDSSYSVISK TSYVELQKPT VNGKPRNKLL PSDEESFVND FDDARNGVGG EDADDLDFDV ADYPLVHGKS SNQGSGIYGA VFNLTTSIIG AGIMALPATM
101: KVLGLVLGFV LIILMALLSE ISVELLVRFS VLYKSKSYGE VVQFALGKTA RVLSEICIIV NNGGVLVVYL IIMGDVMSGS LHHIGVLDQW LGNGFWDHRK
201: VLILIVMVIF LAPLCALNKI DSLSVTSAAS VALAVVFVVV CFVVATIKLI EGTIDPPRLS PDFGSKQAIL DLLVVIPIMS NAYVCHFNVQ PIYNELEGRS
301: PHKMNRVGRI TTAICVVVYA STAVSGYLLF GKDTESDILT NFDQDLGIRF SSAVNYIVRI GYILHLVLVF PVIHFSLRET VNTLLFEGSP PLSESKKRSL
401: GLTVVLLALI YIGSTMIPNI WTAFKFTGAT SAVSLGFTFP ALIALRLGKQ SNSLSFVERS VSWLMLILAV VVSIVGTIGN IYSLESKSD
101: KVLGLVLGFV LIILMALLSE ISVELLVRFS VLYKSKSYGE VVQFALGKTA RVLSEICIIV NNGGVLVVYL IIMGDVMSGS LHHIGVLDQW LGNGFWDHRK
201: VLILIVMVIF LAPLCALNKI DSLSVTSAAS VALAVVFVVV CFVVATIKLI EGTIDPPRLS PDFGSKQAIL DLLVVIPIMS NAYVCHFNVQ PIYNELEGRS
301: PHKMNRVGRI TTAICVVVYA STAVSGYLLF GKDTESDILT NFDQDLGIRF SSAVNYIVRI GYILHLVLVF PVIHFSLRET VNTLLFEGSP PLSESKKRSL
401: GLTVVLLALI YIGSTMIPNI WTAFKFTGAT SAVSLGFTFP ALIALRLGKQ SNSLSFVERS VSWLMLILAV VVSIVGTIGN IYSLESKSD
Arabidopsis Description
AVT6EAmino acid transporter AVT6E [Source:UniProtKB/Swiss-Prot;Acc:Q9M8L9]
SUBAcon: [peroxisome,cytosol,plasma membrane]
SUBAcon: [peroxisome,cytosol,plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.