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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane, plastid

Predictor Summary:
  • plastid 3
  • endoplasmic reticulum 2
  • extracellular 1
  • vacuole 1
  • plasma membrane 3
  • golgi 1
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane, plastid
Any Predictor:endoplasmic reticulum, plasma membrane, plastid
BaCelLo:plastid
ChloroP:plastid
MultiLoc:endoplasmic reticulum
Predotar:plastid
PProwler:secretory
WoLF PSORT:plasma membrane
YLoc:plasma membrane
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY52929 Canola plastid 96.48 98.65
Bra017005.1-P Field mustard plastid 96.26 98.65
AT2G40420.1 Thale cress plastid 84.62 87.5
CDX72159 Canola plasma membrane 74.95 78.57
CDY27236 Canola plasma membrane 73.85 77.42
CDY27235 Canola plasma membrane 67.25 75.37
CDY27234 Canola plasma membrane 71.87 72.03
VIT_13s0067g02220.t01 Wine grape golgi, plasma membrane, plastid, vacuole 57.8 59.37
KRH31212 Soybean plastid 56.7 59.17
KRG97662 Soybean plastid 56.48 58.95
KRH14877 Soybean plasma membrane 54.73 57.64
KRH73226 Soybean endoplasmic reticulum, plasma membrane, plastid, vacuole 54.73 57.37
Solyc05g052300.2.1 Tomato cytosol, peroxisome, plasma membrane 53.41 55.48
PGSC0003DMT400030399 Potato plasma membrane 53.19 55.25
Solyc06g050800.2.1 Tomato plasma membrane 52.75 54.79
PGSC0003DMT400074952 Potato plasma membrane 52.75 54.55
GSMUA_Achr7P22240_001 Banana cytosol, endoplasmic reticulum, plasma membrane 50.77 51.22
TraesCS3B01G378500.1 Wheat plasma membrane 47.91 47.6
Os01t0825800-01 Rice plasma membrane 47.69 47.59
TraesCS3D01G340400.1 Wheat plasma membrane 47.91 47.49
KXG33635 Sorghum plasma membrane 48.35 47.31
TraesCS3A01G346700.1 Wheat plasma membrane 47.69 47.28
HORVU3Hr1G088360.1 Barley peroxisome, plasma membrane 48.35 47.01
HORVU3Hr1G045630.2 Barley plastid 47.69 45.59
CDX74504 Canola plasma membrane 30.99 43.38
CDX86347 Canola plasma membrane 42.42 41.96
CDY67720 Canola plasma membrane 42.2 41.92
CDY00078 Canola plasma membrane 42.2 41.92
CDX85291 Canola mitochondrion, peroxisome, plasma membrane 42.42 41.77
CDY45907 Canola plasma membrane 41.98 41.52
CDY35776 Canola plasma membrane 41.76 41.48
CDY37894 Canola plasma membrane 40.44 40.62
CDY17030 Canola plasma membrane 37.58 37.92
CDY47589 Canola plasma membrane 37.58 37.83
CDX67416 Canola plasma membrane 35.16 36.36
CDY49071 Canola plasma membrane 34.29 35.54
CDX79381 Canola plasma membrane 34.73 34.2
CDX67951 Canola plasma membrane 34.95 33.9
Zm00001d012485_P001 Maize golgi, plasma membrane, plastid 48.35 33.03
CDY39969 Canola plasma membrane 33.85 31.82
CDX87318 Canola plasma membrane 33.63 31.61
CDY37600 Canola cytosol, peroxisome, plasma membrane 33.19 31.33
CDY38675 Canola plasma membrane 32.97 31.12
Zm00001d030531_P001 Maize extracellular, plasma membrane, vacuole 12.31 30.43
Protein Annotations
EnsemblPlants:CDY66186EnsemblPlantsGene:GSBRNA2T00052244001GO:A0A078JK40GO:GO:0005575GO:GO:0016020GO:GO:0016021
InterPro:AA_transpt_TMPANTHER:PTHR22950PANTHER:PTHR22950:SF323PFAM:PF01490ProteinID:CDY66186ProteinID:CDY66186.1
SEG:segTMHMM:TMhelixUniParc:UPI0004EB6972UniProt:A0A078JK40MapMan:24.2.3.4.7:
Description
BnaCnng49870DBnaCnng49870D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JK40]
Coordinates
chrLK035127:+:7318..9720
Molecular Weight (calculated)
49215.7 Da
IEP (calculated)
8.331
GRAVY (calculated)
0.815
Length
455 amino acids
Sequence
(BLAST)
001: MTPAIKAPLL PSHDPSSSSP PEEKHGSFAG AIFNVSTSIV GAGIMSIPAA FKVLGVIPSL SIIVIIAWLS NVSAGFLMKS TVAGDATTYA GVMKESFGKP
101: GSVAVQVITM VVTFGSMIIF SIIIGDVLSG NEKGGVIHLG LLQGWFGSHW WNTRFFSLLF IFVFLFLPLV LCRRVDRLAL SSAISFLLAL FFVIISSVLA
201: IVALVQGRTK SPRLFPDLNN GGQSFFNLFT ASPVIVTAFT FHFNLHPVGF ELKDPLQVLS ATRVSVILCA TIYSATGLFC YLLFGDATMT DVLMNFDESS
301: GSSIGSLLND IVRASYAIHL MLVFPLLNFS LRANLDELLF PKKVSLVNDN KRFFGLTFPL LISCFLAAIA IPDIWYFFQF LGSTSTVSIA FIFPAAIVLR
401: NVNGISTLKE KIVASVMFAL AVATSIIAIS TNIYSFTETE EALNFLSSHS LFKNL
Best Arabidopsis Sequence Match ( AT2G40420.1 )
(BLAST)
001: MSPAIKAPLL PNQEPSSSSS ENHGSFAGAV FNISTSIVGA GIMAIPAAFK VLGVIPSLSI IVIIAWLSNV SAGFLMKSSL AGESTTYAGV MKESFGKSGA
101: VAVTVVTMVV TFGSMIIFSI IIGDVISGNE KDGIIHLGLL QEWFGSHWWN TRFFGLLFIF VFLFLPLVLC RRVERLAFSS AISFLLALLF VVISSVLAII
201: ALVQGKTKPP RLFPELNDGG LSFFSLFTAS PVIVTAFTFH FNVHPVAFEL KDPLNVLSAT RISVILCATI YSATGLFCYL LFGDSTMTDV LMNFDQSTSS
301: SVGSLLNDIV RLSYAIHLML VFPLLNFSLR ANLDELLFPM KLSLVEDNKR FFALTFPLLI SCFLGAIAIP DIWYFFQFLG STSTVSIAFI FPAAIVLRNV
401: NGFSTLREKI VASVMLVLAV ATSIIAISTN IYTFTATEET
Arabidopsis Description
AVT6DAmino acid transporter AVT6D [Source:UniProtKB/Swiss-Prot;Acc:Q0WQJ3]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.