Factsheet for Bra017005.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
endoplasmic reticulum 2
plasma membrane 4
extracellular 1
vacuole 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid, secretory
BaCelLo:	plastid
ChloroP:	plastid
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	plasma membrane, plastid
Predotar:	plastid
PProwler:	secretory
TargetP:	plastid
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY52929	Canola	plastid	99.32	99.1
CDY66186	Canola	plasma membrane, plastid	98.65	96.26
AT2G40420.1	Thale cress	plastid	87.16	87.95
Bra007225.1-P	Field mustard	plasma membrane	76.35	78.11
Bra007226.1-P	Field mustard	plasma membrane	63.29	67.22
VIT_13s0067g02220.t01	Wine grape	golgi, plasma membrane, plastid, vacuole	59.46	59.59
KRH31212	Soybean	plastid	58.11	59.17
KRG97662	Soybean	plastid	57.88	58.95
KRH14877	Soybean	plasma membrane	55.86	57.41
KRH73226	Soybean	endoplasmic reticulum, plasma membrane, plastid, vacuole	55.86	57.14
Solyc06g050800.2.1	Tomato	plasma membrane	54.5	55.25
Solyc05g052300.2.1	Tomato	cytosol, peroxisome, plasma membrane	54.5	55.25
PGSC0003DMT400030399	Potato	plasma membrane	54.28	55.02
PGSC0003DMT400074952	Potato	plasma membrane	54.5	55.0
GSMUA_Achr7P22240_001	Banana	cytosol, endoplasmic reticulum, plasma membrane	51.8	51.0
TraesCS3B01G378500.1	Wheat	plasma membrane	49.32	47.82
Os01t0825800-01	Rice	plasma membrane	49.1	47.81
TraesCS3D01G340400.1	Wheat	plasma membrane	49.32	47.71
KXG33635	Sorghum	plasma membrane	49.77	47.53
TraesCS3A01G346700.1	Wheat	plasma membrane	49.1	47.49
HORVU3Hr1G088360.1	Barley	peroxisome, plasma membrane	49.77	47.22
HORVU3Hr1G045630.2	Barley	plastid	49.1	45.8
Bra036198.1-P	Field mustard	plasma membrane	43.47	42.32
Bra025416.1-P	Field mustard	mitochondrion, peroxisome, plasma membrane	43.69	42.17
Bra020737.1-P	Field mustard	plasma membrane	42.79	41.39
Bra014071.1-P	Field mustard	plasma membrane	38.51	38.26
Bra028420.1-P	Field mustard	plasma membrane	36.49	36.82
Bra003570.1-P	Field mustard	cytosol	35.81	34.49
Zm00001d012485_P001	Maize	golgi, plasma membrane, plastid	49.77	33.18
Bra035175.1-P	Field mustard	plasma membrane	34.23	31.41
Bra008469.1-P	Field mustard	plasma membrane	34.01	31.33
Zm00001d030531_P001	Maize	extracellular, plasma membrane, vacuole	12.61	30.43

Protein Annotations

EnsemblPlants:Bra017005.1	EnsemblPlants:Bra017005.1-P	EnsemblPlantsGene:Bra017005	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005773	GO:GO:0005774	GO:GO:0016020	GO:GO:0016021	InterPro:AA_transpt_TM
PANTHER:PTHR22950	PANTHER:PTHR22950:SF323	PFAM:PF01490	SEG:seg	TMHMM:TMhelix	UniParc:UPI0002544F3C
UniProt:M4DKH5	MapMan:24.2.3.4.7	:	:	:	:

Description

AT2G40420 (E=2e-186) | amino acid transporter family protein

Coordinates

chrA04:+:17176601..17178623

Molecular Weight (calculated)

47889.1 Da

IEP (calculated)

7.995

GRAVY (calculated)

0.828

Length

444 amino acids

Sequence
(BLAST)

001: MTPAIKAPLL PNHDPSSPSS SPPEEKHGSF AGAIFNVSTS IVGAGIMSIP AAFKVLGVIP SLSIIVIIAW LSNVSAGFLM KSTVAGDATT YAGVMKESFG
101: KPGSVAVQVI TMVVTFGSMI IFSIIIGDVL SGNEKGGVIH LGLLQGWFGS HWWNTRFFSL LFIFVFLFLP LVLCRRVDRL ALSSAISFLL ALLFVIISSV
201: LAIVALVQGR AKSPRLFPDL NNGGQSFFNL FTASPVIVTA FTFHFNLHPV GFELKDPLQV LSATRVSVIL CATIYSATGL FCYLLFGDAT MTDVLMNFDE
301: SSGSSIGSLL NDIVRVSYAI HLMLVFPLLN FSLRANLDEL LFPKKVSLVN DNKRFFGLTF PLLISCFLAA IAIPDIWYFF QFLGSTSTVS IAFIFPAAIV
401: LRNVNGISTL KEKIVASVMF ALAVATSIIA ISTNIYSFTE TEEA

Best Arabidopsis Sequence Match ( AT2G40420.1 )
(BLAST)

001: MSPAIKAPLL PNQEPSSSSS ENHGSFAGAV FNISTSIVGA GIMAIPAAFK VLGVIPSLSI IVIIAWLSNV SAGFLMKSSL AGESTTYAGV MKESFGKSGA
101: VAVTVVTMVV TFGSMIIFSI IIGDVISGNE KDGIIHLGLL QEWFGSHWWN TRFFGLLFIF VFLFLPLVLC RRVERLAFSS AISFLLALLF VVISSVLAII
201: ALVQGKTKPP RLFPELNDGG LSFFSLFTAS PVIVTAFTFH FNVHPVAFEL KDPLNVLSAT RISVILCATI YSATGLFCYL LFGDSTMTDV LMNFDQSTSS
301: SVGSLLNDIV RLSYAIHLML VFPLLNFSLR ANLDELLFPM KLSLVEDNKR FFALTFPLLI SCFLGAIAIP DIWYFFQFLG STSTVSIAFI FPAAIVLRNV
401: NGFSTLREKI VASVMLVLAV ATSIIAISTN IYTFTATEET

Arabidopsis Description

AVT6DAmino acid transporter AVT6D [Source:UniProtKB/Swiss-Prot;Acc:Q0WQJ3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.