Factsheet for Bra007226.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 2
cytosol 2
plasma membrane 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY27234	Canola	plasma membrane	87.56	80.62
CDY27235	Canola	plasma membrane	76.08	78.33
Bra007225.1-P	Field mustard	plasma membrane	81.1	78.11
AT3G56200.1	Thale cress	plasma membrane	77.03	74.02
Bra017005.1-P	Field mustard	plastid	67.22	63.29
VIT_13s0067g02220.t01	Wine grape	golgi, plasma membrane, plastid, vacuole	56.7	53.5
Solyc05g052300.2.1	Tomato	cytosol, peroxisome, plasma membrane	55.02	52.51
PGSC0003DMT400030399	Potato	plasma membrane	54.78	52.28
KRG97662	Soybean	plastid	54.31	52.06
KRH31212	Soybean	plastid	54.31	52.06
KRH14877	Soybean	plasma membrane	53.59	51.85
KRH73226	Soybean	endoplasmic reticulum, plasma membrane, plastid, vacuole	53.83	51.84
PGSC0003DMT400074952	Potato	plasma membrane	52.15	49.55
Solyc06g050800.2.1	Tomato	plasma membrane	51.91	49.54
GSMUA_Achr7P22240_001	Banana	cytosol, endoplasmic reticulum, plasma membrane	50.24	46.56
Os01t0825800-01	Rice	plasma membrane	49.28	45.18
KXG33635	Sorghum	plasma membrane	49.52	44.52
TraesCS3B01G378500.1	Wheat	plasma membrane	47.61	43.45
HORVU3Hr1G088360.1	Barley	peroxisome, plasma membrane	48.56	43.38
TraesCS3D01G340400.1	Wheat	plasma membrane	47.61	43.36
TraesCS3A01G346700.1	Wheat	plasma membrane	47.37	43.14
HORVU3Hr1G045630.2	Barley	plastid	47.85	42.02
Bra025416.1-P	Field mustard	mitochondrion, peroxisome, plasma membrane	42.58	38.7
Bra020737.1-P	Field mustard	plasma membrane	40.91	37.25
Bra036198.1-P	Field mustard	plasma membrane	40.43	37.06
Bra014071.1-P	Field mustard	plasma membrane	37.08	34.68
Bra028420.1-P	Field mustard	plasma membrane	34.93	33.18
Bra003570.1-P	Field mustard	cytosol	35.89	32.54
Bra035175.1-P	Field mustard	plasma membrane	36.6	31.61
Zm00001d012485_P001	Maize	golgi, plasma membrane, plastid	48.8	30.63
Bra008469.1-P	Field mustard	plasma membrane	35.17	30.5
Zm00001d030531_P001	Maize	extracellular, plasma membrane, vacuole	9.81	22.28

Protein Annotations

EnsemblPlants:Bra007226.1	EnsemblPlants:Bra007226.1-P	EnsemblPlantsGene:Bra007226	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:AA_transpt_TM	PANTHER:PTHR22950	PANTHER:PTHR22950:SF323	PFAM:PF01490	SEG:seg	TMHMM:TMhelix
UniParc:UPI0002542B23	UniProt:M4CSN4	MapMan:24.2.3.4.7	:	:	:

Description

AT3G56200 (E=1e-156) | amino acid transporter family protein

Coordinates

chrA09:+:28079338..28081517

Molecular Weight (calculated)

46109.7 Da

IEP (calculated)

8.661

GRAVY (calculated)

0.543

Length

418 amino acids

Sequence
(BLAST)

001: MSPQIETPLL PKQEPSSENH ESTSGAGIMS MPAAFKVLGV IPALLIITVV AWLSHSLCRV PYEVNYRRRV NNIRRSYERV VRETRVRRCT GDVLCGSDNG
101: GSVHLGVLQE WFGSHWWNTR IFALLFIYGF VLLPLVLCRR VERLAFSSAI SFILAVFFVV ISSMLAISAL MKGQTKSPRL FPDLTNGGSF WNLFTASPVI
201: VTAFTFHFNG KNPSNTPNVQ EIAVHPIGFE LKDPLHMIPA TKISVILCAA IYFATGLFGY LLFGDATMSD ILVNFDESSG SSIGSLLNDI VRLSYALHLM
301: LVFPLMNFSL RANLDELMFP ARKPLAEDTN RFIGLTLALL ICCFLSAIAV PNIWYFFQFM GSTTTVSIAF IFPAAIVLRN VHGVSTSSEK MVAAIMLVLA
401: VATSIIAIST NLYSLTSN

Best Arabidopsis Sequence Match ( AT3G56200.1 )
(BLAST)

001: MTPQIKTHLL PKQEPSSSEN HGSSTSGIVF NVSTSIIGAG IMSMPAAFKV LGIVPAFLII TIIAWLSTIS VGFLMKSTLA GESTTYAGVM KESFGKTGSI
101: AVQIATMVAT FGCMIIFSII IGDVLSGNEN GGPEHIGVLQ EWFGSYWWNT RIFALLFVYG FVLLPLVLRR RVERLAISSA VSFLLAVLFV VISSVLAISA
201: LVNGQTKNPR LFPELSNGGS FWQLFTASPV IVTAFTFHFN VHPIGFELKD PLQVIPATKI SVILCAAIYF ATGLFGYLLF GDATMSDILV NFDQSSGSSI
301: GSLLNDIVRL SYVLHLMLVF PLLNFSLRAN LDELLYPKKP SLEKDTKRFI GLTLALLICC FLSAIAVPDI WYFFQFMGST ITVSIAFIFP AAIVLRNIHG
401: VSTSREKIVA AIMLVLAVAT SIIAISTNLY SLAAN

Arabidopsis Description

AVT6CAmino acid transporter AVT6C [Source:UniProtKB/Swiss-Prot;Acc:Q9LYM2]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.