Factsheet for VIT_13s0067g02220.t01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, golgi, plastid, vacuole

Predictor Summary:

plastid 3
mitochondrion 1
golgi 3
plasma membrane 3
cytosol 1
extracellular 1
endoplasmic reticulum 1
vacuole 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi, plasma membrane, plastid, vacuole
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	golgi
Plant-mPloc:	cytosol, golgi, plasma membrane, plastid
PProwler:	secretory
WoLF PSORT:	vacuole
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH14877	Soybean	plasma membrane	66.59	68.29
Solyc05g052300.2.1	Tomato	cytosol, peroxisome, plasma membrane	67.49	68.26
PGSC0003DMT400030399	Potato	plasma membrane	67.49	68.26
KRH73226	Soybean	endoplasmic reticulum, plasma membrane, plastid, vacuole	66.14	67.51
KRG97662	Soybean	plastid	65.91	66.97
KRH31212	Soybean	plastid	65.69	66.74
Solyc06g050800.2.1	Tomato	plasma membrane	65.24	65.98
PGSC0003DMT400074952	Potato	plasma membrane	64.79	65.23
CDY27236	Canola	plasma membrane	61.17	62.44
Bra007225.1-P	Field mustard	plasma membrane	60.95	62.21
CDX72159	Canola	plasma membrane	60.95	62.21
AT3G56200.1	Thale cress	plasma membrane	60.95	62.07
CDY27235	Canola	plasma membrane	55.53	60.59
Bra017005.1-P	Field mustard	plastid	59.59	59.46
CDY52929	Canola	plastid	59.37	59.1
CDY27234	Canola	plasma membrane	60.27	58.81
AT2G40420.1	Thale cress	plastid	58.01	58.41
CDY66186	Canola	plasma membrane, plastid	59.37	57.8
GSMUA_Achr7P22240_001	Banana	cytosol, endoplasmic reticulum, plasma membrane	58.47	57.43
Bra007226.1-P	Field mustard	plasma membrane	53.5	56.7
Os01t0825800-01	Rice	plasma membrane	56.88	55.26
TraesCS3B01G378500.1	Wheat	plasma membrane	56.43	54.59
HORVU3Hr1G088360.1	Barley	peroxisome, plasma membrane	57.34	54.27
TraesCS3A01G346700.1	Wheat	plasma membrane	56.21	54.25
TraesCS3D01G340400.1	Wheat	plasma membrane	55.98	54.03
KXG33635	Sorghum	plasma membrane	56.66	53.98
HORVU3Hr1G045630.2	Barley	plastid	56.21	52.31
VIT_18s0001g08570.t01	Wine grape	mitochondrion, plasma membrane	50.56	49.89
VIT_14s0083g00740.t01	Wine grape	plasma membrane	48.53	46.54
Zm00001d012485_P001	Maize	golgi, plasma membrane, plastid	55.76	37.09
VIT_09s0002g08410.t01	Wine grape	cytosol, peroxisome, plasma membrane	40.86	36.64
Zm00001d030531_P001	Maize	extracellular, plasma membrane, vacuole	14.0	33.7

Protein Annotations

EntrezGene:100255327	wikigene:100255327	MapMan:24.2.3.4.7	InterPro:AA_transpt_TM	ProteinID:CBI25402	ProteinID:CBI25402.3
UniProt:D7T4H0	EMBL:FN595514	GO:GO:0003333	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575
GO:GO:0006810	GO:GO:0008150	GO:GO:0015171	GO:GO:0016020	GO:GO:0016021	EntrezGene:LOC100255327
wikigene:LOC100255327	PFAM:PF01490	PANTHER:PTHR22950	PANTHER:PTHR22950:SF323	TIGR:TC63254	TMHMM:TMhelix
UniParc:UPI00015CA977	ArrayExpress:VIT_13s0067g02220	EnsemblPlantsGene:VIT_13s0067g02220	EnsemblPlants:VIT_13s0067g02220.t01	unigene:Vvi.16399	RefSeq:XP_002278665
RefSeq:XP_002278665.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr13:+:1250090..1253132

Molecular Weight (calculated)

47805.6 Da

IEP (calculated)

9.338

GRAVY (calculated)

0.870

Length

443 amino acids

Sequence
(BLAST)

001: MKPAKTNAGA LAPLLPELSS QEAKAPRRAS VLGAVFNVST SIIGAGIMSI PATLKVLGVA PALGLIVIIA LLVDVSVEFL LRFTHSGRST TYAGLMAESY
101: GRIGSVAVQI CVMITNLGCL IIYQIIIGDV LSGNQPEGTG HLGVLQEWFG LHWWNSRAFA LLIVVLFVLF PLALFRRVGS LRFTSAISVL LAVVFVAISS
201: VMAISALFEG KAQSPRLLPE LDTQTSFFDL FTAVPVIVTA FTFHFNVHPI GSELGKPSDM ISAVRVSLVL CAVIYSSIGI FGYLLFGDSI MPDILVNFDQ
301: NSGSAMGALL NDTVRLSYAL HLMLVFPLLN FSLRANVDEL LFPKRPLLAT ATPRFMSITV ILLVFSYFAA IAIPNIWYFF QFMGSTSAVC LAFIFPAAIT
401: LRDVHGISTR KDRVIATIMI ILAVATSSVA ISTNLYSLFL NKK

Best Arabidopsis Sequence Match ( AT3G56200.1 )
(BLAST)

001: MTPQIKTHLL PKQEPSSSEN HGSSTSGIVF NVSTSIIGAG IMSMPAAFKV LGIVPAFLII TIIAWLSTIS VGFLMKSTLA GESTTYAGVM KESFGKTGSI
101: AVQIATMVAT FGCMIIFSII IGDVLSGNEN GGPEHIGVLQ EWFGSYWWNT RIFALLFVYG FVLLPLVLRR RVERLAISSA VSFLLAVLFV VISSVLAISA
201: LVNGQTKNPR LFPELSNGGS FWQLFTASPV IVTAFTFHFN VHPIGFELKD PLQVIPATKI SVILCAAIYF ATGLFGYLLF GDATMSDILV NFDQSSGSSI
301: GSLLNDIVRL SYVLHLMLVF PLLNFSLRAN LDELLYPKKP SLEKDTKRFI GLTLALLICC FLSAIAVPDI WYFFQFMGST ITVSIAFIFP AAIVLRNIHG
401: VSTSREKIVA AIMLVLAVAT SIIAISTNLY SLAAN

Arabidopsis Description

AVT6CAmino acid transporter AVT6C [Source:UniProtKB/Swiss-Prot;Acc:Q9LYM2]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.