Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 5
- endoplasmic reticulum 2
- extracellular 1
- vacuole 1
- plasma membrane 3
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra017005.1-P | Field mustard | plastid | 87.95 | 87.16 |
| CDY52929 | Canola | plastid | 87.95 | 86.97 |
| CDY66186 | Canola | plasma membrane, plastid | 87.5 | 84.62 |
| AT3G56200.1 | Thale cress | plasma membrane | 75.45 | 76.32 |
| KRG97662 | Soybean | plastid | 58.18 | 58.72 |
| KRH31212 | Soybean | plastid | 57.95 | 58.49 |
| VIT_13s0067g02220.t01 | Wine grape | golgi, plasma membrane, plastid, vacuole | 58.41 | 58.01 |
| KRH14877 | Soybean | plasma membrane | 56.36 | 57.41 |
| KRH73226 | Soybean | endoplasmic reticulum, plasma membrane, plastid, vacuole | 56.59 | 57.37 |
| Solyc05g052300.2.1 | Tomato | cytosol, peroxisome, plasma membrane | 55.23 | 55.48 |
| PGSC0003DMT400030399 | Potato | plasma membrane | 55.0 | 55.25 |
| PGSC0003DMT400074952 | Potato | plasma membrane | 54.77 | 54.77 |
| Solyc06g050800.2.1 | Tomato | plasma membrane | 54.32 | 54.57 |
| GSMUA_Achr7P22240_001 | Banana | cytosol, endoplasmic reticulum, plasma membrane | 51.82 | 50.55 |
| TraesCS3B01G378500.1 | Wheat | plasma membrane | 48.64 | 46.72 |
| TraesCS3D01G340400.1 | Wheat | plasma membrane | 48.64 | 46.62 |
| TraesCS3A01G346700.1 | Wheat | plasma membrane | 48.41 | 46.41 |
| Os01t0825800-01 | Rice | plasma membrane | 47.95 | 46.27 |
| KXG33635 | Sorghum | plasma membrane | 48.86 | 46.24 |
| HORVU3Hr1G088360.1 | Barley | peroxisome, plasma membrane | 48.86 | 45.94 |
| HORVU3Hr1G045630.2 | Barley | plastid | 48.18 | 44.54 |
| AT5G38820.2 | Thale cress | plasma membrane | 44.55 | 42.52 |
| AT3G30390.2 | Thale cress | plasma membrane | 44.09 | 42.17 |
| AT1G80510.1 | Thale cress | cytosol, peroxisome, plasma membrane | 36.82 | 33.13 |
| Zm00001d012485_P001 | Maize | golgi, plasma membrane, plastid | 48.41 | 31.98 |
| Zm00001d030531_P001 | Maize | extracellular, plasma membrane, vacuole | 12.27 | 29.35 |
Protein Annotations
| MapMan:24.2.3.4.7 | EntrezGene:818635 | ProteinID:AAM15348.1 | InterPro:AA_transpt_TM | ProteinID:AEC09826.1 | EMBL:AK228702 |
| ArrayExpress:AT2G40420 | EnsemblPlantsGene:AT2G40420 | RefSeq:AT2G40420 | TAIR:AT2G40420 | RefSeq:AT2G40420-TAIR-G | EnsemblPlants:AT2G40420.1 |
| TAIR:AT2G40420.1 | Unigene:At.22034 | GO:GO:0003333 | GO:GO:0003674 | GO:GO:0005215 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005773 | GO:GO:0005774 | GO:GO:0006810 |
| GO:GO:0006865 | GO:GO:0008150 | GO:GO:0015171 | GO:GO:0016020 | GO:GO:0016021 | RefSeq:NP_181573.3 |
| PFAM:PF01490 | PO:PO:0000005 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 |
| PO:PO:0001016 | PO:PO:0001017 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 |
| PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 |
| PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 |
| PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 |
| PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 |
| PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025195 | PO:PO:0025281 | PANTHER:PTHR22950 |
| PANTHER:PTHR22950:SF323 | UniProt:Q0WQJ3 | TMHMM:TMhelix | UniParc:UPI000034EE56 | SEG:seg | : |
Description
AVT6DAmino acid transporter AVT6D [Source:UniProtKB/Swiss-Prot;Acc:Q0WQJ3]
Coordinates
chr2:+:16877144..16879214
Molecular Weight (calculated)
47672.9 Da
IEP (calculated)
6.785
GRAVY (calculated)
0.890
Length
440 amino acids
Sequence
(BLAST)
(BLAST)
001: MSPAIKAPLL PNQEPSSSSS ENHGSFAGAV FNISTSIVGA GIMAIPAAFK VLGVIPSLSI IVIIAWLSNV SAGFLMKSSL AGESTTYAGV MKESFGKSGA
101: VAVTVVTMVV TFGSMIIFSI IIGDVISGNE KDGIIHLGLL QEWFGSHWWN TRFFGLLFIF VFLFLPLVLC RRVERLAFSS AISFLLALLF VVISSVLAII
201: ALVQGKTKPP RLFPELNDGG LSFFSLFTAS PVIVTAFTFH FNVHPVAFEL KDPLNVLSAT RISVILCATI YSATGLFCYL LFGDSTMTDV LMNFDQSTSS
301: SVGSLLNDIV RLSYAIHLML VFPLLNFSLR ANLDELLFPM KLSLVEDNKR FFALTFPLLI SCFLGAIAIP DIWYFFQFLG STSTVSIAFI FPAAIVLRNV
401: NGFSTLREKI VASVMLVLAV ATSIIAISTN IYTFTATEET
101: VAVTVVTMVV TFGSMIIFSI IIGDVISGNE KDGIIHLGLL QEWFGSHWWN TRFFGLLFIF VFLFLPLVLC RRVERLAFSS AISFLLALLF VVISSVLAII
201: ALVQGKTKPP RLFPELNDGG LSFFSLFTAS PVIVTAFTFH FNVHPVAFEL KDPLNVLSAT RISVILCATI YSATGLFCYL LFGDSTMTDV LMNFDQSTSS
301: SVGSLLNDIV RLSYAIHLML VFPLLNFSLR ANLDELLFPM KLSLVEDNKR FFALTFPLLI SCFLGAIAIP DIWYFFQFLG STSTVSIAFI FPAAIVLRNV
401: NGFSTLREKI VASVMLVLAV ATSIIAISTN IYTFTATEET
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.