Factsheet for TraesCS6D01G270800.1

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

peroxisome 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 3
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	peroxisome, plasma membrane
MultiLoc:	peroxisome
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6B01G317700.1	Wheat	plasma membrane	98.88	98.88
TraesCS6A01G288200.1	Wheat	plasma membrane	98.43	97.77
HORVU6Hr1G072350.1	Barley	plasma membrane	96.63	95.98
Os02t0727100-01	Rice	plasma membrane	81.57	81.03
Zm00001d051703_P001	Maize	plasma membrane	77.08	70.29
TraesCS7D01G213900.1	Wheat	plasma membrane	71.69	69.2
GSMUA_Achr7P20080_001	Banana	extracellular, plasma membrane, vacuole	61.8	68.58
GSMUA_Achr8P24480_001	Banana	cytosol, golgi, plasma membrane	66.97	64.36
PGSC0003DMT400068294	Potato	plasma membrane	65.84	63.28
Bra025416.1-P	Field mustard	mitochondrion, peroxisome, plasma membrane	64.94	62.83
CDX86347	Canola	plasma membrane	64.94	62.83
CDX85291	Canola	mitochondrion, peroxisome, plasma membrane	64.94	62.55
AT3G30390.2	Thale cress	plasma membrane	64.49	62.39
Solyc02g089400.2.1	Tomato	plasma membrane	64.49	62.39
Solyc02g065680.2.1	Tomato	plasma membrane	64.72	62.2
KXG30838	Sorghum	plasma membrane	77.3	62.09
TraesCS6D01G160400.1	Wheat	peroxisome	63.82	62.01
VIT_14s0083g00740.t01	Wine grape	plasma membrane	64.27	61.9
TraesCS7D01G387200.1	Wheat	plasma membrane	63.37	61.57
CDY35776	Canola	plasma membrane	63.15	61.35
CDX74504	Canola	plasma membrane	44.72	61.23
Bra036198.1-P	Field mustard	plasma membrane	62.7	61.18
CDY45907	Canola	plasma membrane	63.15	61.09
Bra020737.1-P	Field mustard	plasma membrane	62.92	61.0
CDY67720	Canola	plasma membrane	62.7	60.92
CDY00078	Canola	plasma membrane	62.7	60.92
KRH45158	Soybean	plasma membrane	62.92	60.09
KRH01440	Soybean	plasma membrane	62.47	59.78
KRG93742	Soybean	plasma membrane	62.02	59.61
CDY37894	Canola	plasma membrane	60.0	58.94
AT5G38820.2	Thale cress	plasma membrane	60.9	58.79
PGSC0003DMT400003740	Potato	plasma membrane	63.15	58.3
KRG93745	Soybean	plasma membrane	59.55	57.11
KRH18319	Soybean	plasma membrane	59.1	56.56
Bra014071.1-P	Field mustard	plasma membrane	55.28	55.03
CDY17030	Canola	plasma membrane	55.73	54.99
KRH54971	Soybean	plasma membrane	57.75	54.68
CDY47589	Canola	plasma membrane	55.28	54.42
CDY49071	Canola	plasma membrane	52.36	53.08
CDX67416	Canola	plasma membrane	52.13	52.73
Bra028420.1-P	Field mustard	plasma membrane	52.13	52.73
TraesCS3D01G340400.1	Wheat	plasma membrane	46.07	44.66
TraesCS7D01G507300.1	Wheat	cytosol, peroxisome, plasma membrane, plastid	42.7	38.7

Protein Annotations

EnsemblPlants:TraesCS6D01G270800.1	EnsemblPlantsGene:TraesCS6D01G270800	InterPro:AA_transpt_TM	PANTHER:PTHR22950	PANTHER:PTHR22950:SF270	PFAM:PF01490
SEG:seg	TMHMM:TMhelix	MapMan:24.2.3.4.7	:	:	:

Description

No Description!

Coordinates

chr6D:+:380429738..380434494

Molecular Weight (calculated)

47523.6 Da

IEP (calculated)

7.642

GRAVY (calculated)

0.694

Length

445 amino acids

Sequence
(BLAST)

001: MVMPTAGAGD TEARRPLVAR RHKDGEGDGL DDGDASFSGA VFNLSTTIVG AGIMALPATM RVLGLVPGLT LVVLAAVLTD ASIELLMRFS NAVGAASYGE
101: AMGDAFGALG RGLLQLCVVV NNIGVMVVYM IIIGDVLSGT SSSGKHHHGV FEGWFGPNRW NGRFAILLFT TLAVFMPLTC FKRVDSLKYT SALSVALAVV
201: FVVITAGIAM IKLTRGQIPM PMLFPDVHGT WASIFKLFTA APVLVTAFIC HYNVHPIHNE LKDPAQIKPI VRASLVLCSA VYVTTSFFGF LLFGEETLDD
301: VLANFDSDLG IPYGGVFNDA VRVSYALHLM LVFPIVFHAL RLNMDGLLFP SARPLACDNR RFAALTVALL AVIFLAANFI PNIWDAFQFT GATAAVSIAY
401: IFPAGMALRD RHGIAKKRDK VLALFMIVIA AVSNGVAVYS DASSL

Best Arabidopsis Sequence Match ( AT3G30390.1 )
(BLAST)

001: MTVVGDVAPI PRRNSSTCSN DIAAPLLPEC HGDEVAHDEF NGASFSGAVF NLATTIIGAG IMALPATMKI LGLGLGITMI VVMAFLTDAS IEFLLRFSKA
101: GKNRSYGGLM GGSFGNPGRI LLQVAVLVNN IGVLIVYMII IGDVLAGKTE DGIHHFGVLE GWFGHHWWNG RAAILLITTL GVFAPLACFK RIDSLKFTSA
201: LSVALAVVFL IITAGISIMK LISGGVAMPR LLPDVTDLTS FWNLFTVVPV LVTAFICHYN VHSIQNELED PSQIRPVVRS ALMLCSSVYI MTSIFGFLLF
301: GDDTLDDVLA NFDTDLGIPF GSILNDAVRV SYALHLMLVF PIVFYPLRIN IDGLLFPSAR SLSTSNVRFG CLTAGLISVI FLGANFIPSI WDAFQFTGAT
401: AAVCLGFIFP ASIILKDRHD KATNRDTTLA IFMIVLAVLS NAIAIYSDAY ALFKKNAPRE

Arabidopsis Description

AVT6AAmino acid transporter AVT6A [Source:UniProtKB/Swiss-Prot;Acc:Q9LI61]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.