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Sorghum
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Sorghum
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane

Predictor Summary:
  • nucleus 1
  • golgi 3
  • plasma membrane 4
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane
Any Predictor:nucleus, secretory
BaCelLo:nucleus
MultiLoc:golgi
Plant-mPloc:golgi, plasma membrane
PProwler:secretory
WoLF PSORT:plasma membrane
YLoc:plasma membrane
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
HORVU0Hr1G020180.1 Barley cytosol, plasma membrane 32.46 87.13
TraesCS7A01G212200.2 Wheat plasma membrane 87.15 86.77
TraesCS7D01G213900.1 Wheat plasma membrane 86.93 86.55
TraesCS7B01G119000.2 Wheat plasma membrane 86.49 86.12
Os06t0275800-01 Rice plasma membrane 83.88 85.94
HORVU7Hr1G065280.2 Barley plasma membrane 86.49 85.93
Zm00001d045740_P001 Maize plasma membrane 94.99 75.3
GSMUA_Achr7P20080_001 Banana extracellular, plasma membrane, vacuole 64.49 73.82
GSMUA_Achr8P24480_001 Banana cytosol, golgi, plasma membrane 72.33 71.71
KXG29680 Sorghum plasma membrane 66.45 67.03
VIT_14s0083g00740.t01 Wine grape plasma membrane 66.88 66.45
EER88687 Sorghum cytosol, peroxisome, plasma membrane 66.23 66.23
Solyc02g089400.2.1 Tomato plasma membrane 66.23 66.09
PGSC0003DMT400068294 Potato plasma membrane 65.58 65.01
Solyc02g065680.2.1 Tomato plasma membrane 65.36 64.79
CDX86347 Canola plasma membrane 64.05 63.91
CDY35776 Canola plasma membrane 63.62 63.76
Bra025416.1-P Field mustard mitochondrion, peroxisome, plasma membrane 63.83 63.7
AT3G30390.2 Thale cress plasma membrane 63.62 63.48
CDX85291 Canola mitochondrion, peroxisome, plasma membrane 63.83 63.42
CDY45907 Canola plasma membrane 63.4 63.26
Bra020737.1-P Field mustard plasma membrane 63.18 63.18
Bra036198.1-P Field mustard plasma membrane 62.53 62.94
CDY00078 Canola plasma membrane 62.75 62.88
CDY67720 Canola plasma membrane 62.53 62.66
KRH01440 Soybean plasma membrane 63.4 62.58
CDX74504 Canola plasma membrane 44.23 62.46
PGSC0003DMT400003740 Potato plasma membrane 65.36 62.24
KRH45158 Soybean plasma membrane 62.96 62.02
CDY37894 Canola plasma membrane 61.0 61.81
KRG93742 Soybean plasma membrane 62.09 61.56
AT5G38820.2 Thale cress plasma membrane 61.44 61.17
KRH18319 Soybean plasma membrane 60.35 59.57
KRG93745 Soybean plasma membrane 60.13 59.48
Bra014071.1-P Field mustard plasma membrane 57.08 58.61
CDY17030 Canola plasma membrane 56.64 57.65
KXG30838 Sorghum plasma membrane 69.5 57.58
KRH54971 Soybean plasma membrane 58.61 57.23
CDY47589 Canola plasma membrane 56.21 57.08
CDX67416 Canola plasma membrane 54.03 56.36
CDY49071 Canola plasma membrane 53.81 56.26
HORVU0Hr1G020160.1 Barley golgi, mitochondrion 35.51 56.01
Bra028420.1-P Field mustard plasma membrane 53.38 55.68
KXG33635 Sorghum plasma membrane 46.41 45.81
EER90107 Sorghum cytosol, peroxisome, plastid, vacuole 39.22 37.19
Protein Annotations
MapMan:24.2.3.4.7EntrezGene:8076392InterPro:AA_transpt_TMUniProt:C5Z8K2EnsemblPlants:EER88229ProteinID:EER88229
ProteinID:EER88229.1GO:GO:0003333GO:GO:0003674GO:GO:0005215GO:GO:0005575GO:GO:0006810
GO:GO:0008150GO:GO:0015171GO:GO:0016020GO:GO:0016021PFAM:PF01490PANTHER:PTHR22950
PANTHER:PTHR22950:SF270EnsemblPlantsGene:SORBI_3010G116400unigene:Sbi.8873TMHMM:TMhelixUniParc:UPI0001A89543RefSeq:XP_002436862.1
SEG:seg:::::
Description
hypothetical protein
Coordinates
chr10:+:12668908..12672457
Molecular Weight (calculated)
49408.7 Da
IEP (calculated)
7.091
GRAVY (calculated)
0.714
Length
459 amino acids
Sequence
(BLAST)
001: MGGGGANDRF AGASDPLLPT KRDGDEDDAG ASAFHEFDGA SFAGAVFNLS TTIVGAGIMA LPATMKVLGL VPGLVMIVLA ALLTDASIEL LVRFSRAVGA
101: RSYSAAMGDA FGWWGRRLLQ VCVVINNVGV MVVYMIIIGD VLSGTTSGGE HHYGVLEGWF GIHWWNGRFF VLLVTTLCVF TPLACFKRID SLSYTSTISV
201: ALAVVFVIIT AGIAIIKLIG GQIPMPKLFP TLPDLASVWE LFTAVPVLVT AYVCHYNVHP IHNELKDSSQ IKPIVHTSLT LCSTIYITTS FFGYLLFGES
301: TLSDVLSNFD SNLGIPYSSV LNDAVRVSYA VHLMLVFPMI FHALRLNLDG LLFSSARPLS SDNRRFGIMT ALLLLVIFGS AIFIPSIWDV FQFTGATAAV
401: CIGFIFPAAI TLRDPQGIAK KWDKILAVFM IVLAVVSNVV AVYSDAYKIF HKKSAPSNA
Best Arabidopsis Sequence Match ( AT3G30390.1 )
(BLAST)
001: MTVVGDVAPI PRRNSSTCSN DIAAPLLPEC HGDEVAHDEF NGASFSGAVF NLATTIIGAG IMALPATMKI LGLGLGITMI VVMAFLTDAS IEFLLRFSKA
101: GKNRSYGGLM GGSFGNPGRI LLQVAVLVNN IGVLIVYMII IGDVLAGKTE DGIHHFGVLE GWFGHHWWNG RAAILLITTL GVFAPLACFK RIDSLKFTSA
201: LSVALAVVFL IITAGISIMK LISGGVAMPR LLPDVTDLTS FWNLFTVVPV LVTAFICHYN VHSIQNELED PSQIRPVVRS ALMLCSSVYI MTSIFGFLLF
301: GDDTLDDVLA NFDTDLGIPF GSILNDAVRV SYALHLMLVF PIVFYPLRIN IDGLLFPSAR SLSTSNVRFG CLTAGLISVI FLGANFIPSI WDAFQFTGAT
401: AAVCLGFIFP ASIILKDRHD KATNRDTTLA IFMIVLAVLS NAIAIYSDAY ALFKKNAPRE
Arabidopsis Description
AVT6AAmino acid transporter AVT6A [Source:UniProtKB/Swiss-Prot;Acc:Q9LI61]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.