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Barley
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Barley
Subcellular Localization
min:
: max

 
Winner_takes_all: peroxisome

Predictor Summary:
  • nucleus 1
  • peroxisome 2
  • plasma membrane 2
  • golgi 2
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:peroxisome
Any Predictor:mitochondrion, nucleus, peroxisome, secretory
BaCelLo:nucleus
MultiLoc:peroxisome
Plant-mPloc:golgi, plasma membrane
PProwler:secretory
WoLF PSORT:mitochondrion
YLoc:peroxisome
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS6B01G198900.1 Wheat peroxisome 98.47 98.69
TraesCS6D01G160400.1 Wheat peroxisome 98.47 98.69
TraesCS6A01G170700.1 Wheat plasma membrane 97.39 97.6
Os02t0191300-01 Rice cytosol, peroxisome, plasma membrane 89.76 89.76
KXG29680 Sorghum plasma membrane 86.06 86.81
Zm00001d015658_P001 Maize plasma membrane 84.1 85.59
HORVU7Hr1G092550.1 Barley cytosol 84.1 74.52
HORVU0Hr1G020180.1 Barley cytosol, plasma membrane 24.4 65.5
HORVU7Hr1G065280.2 Barley plasma membrane 65.36 64.94
HORVU6Hr1G072350.1 Barley plasma membrane 62.31 63.84
Solyc02g089400.2.1 Tomato plasma membrane 63.4 63.26
VIT_14s0083g00740.t01 Wine grape plasma membrane 63.62 63.2
PGSC0003DMT400068294 Potato plasma membrane 63.18 62.63
Solyc02g065680.2.1 Tomato plasma membrane 62.75 62.2
CDY35776 Canola plasma membrane 61.87 62.01
CDY45907 Canola plasma membrane 61.87 61.74
KRH01440 Soybean plasma membrane 62.53 61.72
Bra020737.1-P Field mustard plasma membrane 61.66 61.66
KRH45158 Soybean plasma membrane 62.53 61.59
KRG93742 Soybean plasma membrane 62.09 61.56
AT3G30390.2 Thale cress plasma membrane 61.44 61.3
CDX74504 Canola plasma membrane 43.36 61.23
CDY37894 Canola plasma membrane 60.35 61.15
CDX86347 Canola plasma membrane 61.22 61.09
Bra025416.1-P Field mustard mitochondrion, peroxisome, plasma membrane 61.22 61.09
CDX85291 Canola mitochondrion, peroxisome, plasma membrane 61.22 60.82
AT5G38820.2 Thale cress plasma membrane 60.35 60.09
KRH18319 Soybean plasma membrane 60.35 59.57
KRG93745 Soybean plasma membrane 60.13 59.48
Bra036198.1-P Field mustard plasma membrane 59.04 59.43
CDY00078 Canola plasma membrane 59.26 59.39
CDY67720 Canola plasma membrane 59.26 59.39
PGSC0003DMT400003740 Potato plasma membrane 62.31 59.34
Bra014071.1-P Field mustard plasma membrane 55.34 56.82
CDY17030 Canola plasma membrane 55.12 56.1
CDY47589 Canola plasma membrane 54.47 55.31
KRH54971 Soybean plasma membrane 55.99 54.68
CDY49071 Canola plasma membrane 50.76 53.08
CDX67416 Canola plasma membrane 50.33 52.5
Bra028420.1-P Field mustard plasma membrane 50.11 52.27
HORVU3Hr1G088360.1 Barley peroxisome, plasma membrane 45.1 44.23
HORVU3Hr1G045630.2 Barley plastid 44.66 43.07
HORVU0Hr1G020160.1 Barley golgi, mitochondrion 25.49 40.21
HORVU7Hr1G115450.1 Barley cytosol, peroxisome, plastid 37.91 26.98
Protein Annotations
EnsemblPlants:HORVU6Hr1G034900.1EnsemblPlantsGene:HORVU6Hr1G034900InterPro:AA_transpt_TMPANTHER:PTHR22950PANTHER:PTHR22950:SF239PFAM:PF01490
SEG:segTMHMM:TMhelixUniParc:UPI000296F0F8UniProt:M0W1C7MapMan:24.2.3.4.7:
Description
No Description!
Coordinates
chrchr6H:-:165691829..165697772
Molecular Weight (calculated)
50295.8 Da
IEP (calculated)
6.391
GRAVY (calculated)
0.658
Length
459 amino acids
Sequence
(BLAST)
001: MGIGDGSPSE TQHAAHKEKR DETTPLLPLK AEEEDGIHEF NGASFSGAVF NLSTTIVGAG IMALPASIKM LGIIPGILMI ILVALLTEAS IDMMVRCSHQ
101: AKITSYGWLM GDSFGQWGRI ALQASVVINN IGVMIVYMII IGDVLSGTST TGVHHRGIFE GWFGPHLWNS RPVVLLATTI FVFAPLVSFK RLDSLRYTSA
201: LSVALAVVFV VITAGIAILR LIEGTAEIPK LFPEIHEINS IWELFTAVPV LVTAYICHYN VHSIDNELED RSQTKPIVRT SLALCSSVYV ATSFFAYLLF
301: GEATLSDVLA NFDSDLHIPF SSVFNDIVRV SYVVHVMLVF PIVFFALRLN LDGLLFPTSR HISHDNRRFT IITVSLLVVI YLAANFIPSI WDAFQFTGAT
401: AAVLIGFIFP AMIILRDSYG IATKRDKVLA VTMIVLAVLS NSVALYSDAM SIFYRKVEA
Best Arabidopsis Sequence Match ( AT3G30390.1 )
(BLAST)
001: MTVVGDVAPI PRRNSSTCSN DIAAPLLPEC HGDEVAHDEF NGASFSGAVF NLATTIIGAG IMALPATMKI LGLGLGITMI VVMAFLTDAS IEFLLRFSKA
101: GKNRSYGGLM GGSFGNPGRI LLQVAVLVNN IGVLIVYMII IGDVLAGKTE DGIHHFGVLE GWFGHHWWNG RAAILLITTL GVFAPLACFK RIDSLKFTSA
201: LSVALAVVFL IITAGISIMK LISGGVAMPR LLPDVTDLTS FWNLFTVVPV LVTAFICHYN VHSIQNELED PSQIRPVVRS ALMLCSSVYI MTSIFGFLLF
301: GDDTLDDVLA NFDTDLGIPF GSILNDAVRV SYALHLMLVF PIVFYPLRIN IDGLLFPSAR SLSTSNVRFG CLTAGLISVI FLGANFIPSI WDAFQFTGAT
401: AAVCLGFIFP ASIILKDRHD KATNRDTTLA IFMIVLAVLS NAIAIYSDAY ALFKKNAPRE
Arabidopsis Description
AVT6AAmino acid transporter AVT6A [Source:UniProtKB/Swiss-Prot;Acc:Q9LI61]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.