Factsheet for TraesCS1A01G045300.2

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 2
mitochondrion 1
plastid 1
endoplasmic reticulum 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, endoplasmic reticulum, plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	endoplasmic reticulum
YLoc:	cytosol

nucleus: 20204675

gfp PMID: 20204675 doi

I Zaïdi, C Ebel, M Touzri, E Herzog, JL Evrard, AC Schmit, K Masmoudi, M Hanin

Laboratoire de Génétique Moléculaire des Plantes du Centre de Biotechnologie de Sfax, Route Sidi Mansour BP, Sfax, Tunisia.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G046000.2	Wheat	cytosol	98.27	98.4
TraesCS1B01G058600.2	Wheat	cytosol	97.47	97.6
HORVU1Hr1G008230.4	Barley	plastid	97.07	83.43
OQU77254	Sorghum	cytosol	81.38	80.21
Os05t0115800-01	Rice	cytosol, plasma membrane	49.6	80.04
Zm00001d035600_P001	Maize	mitochondrion	74.2	74.1
GSMUA_Achr10P...	Banana	cytosol	50.0	56.37
GSMUA_Achr6P23510_001	Banana	nucleus	53.86	55.63
Bra014764.1-P	Field mustard	cytosol	46.81	49.51
CDX76111	Canola	cytosol	46.68	49.44
CDY02924	Canola	cytosol	46.81	49.3
KRH70517	Soybean	nucleus	51.33	46.06
KRH01585	Soybean	nucleus	51.73	45.76
PGSC0003DMT400060202	Potato	cytosol	53.32	45.36
Solyc05g054700.2.1	Tomato	cytosol	53.19	45.2
VIT_13s0019g00070.t01	Wine grape	cytosol	53.19	44.44
TraesCS3A01G149800.1	Wheat	cytosol	6.65	25.38
TraesCS7A01G223000.1	Wheat	cytosol	6.78	19.25
TraesCS6A01G283000.1	Wheat	cytosol	6.91	18.98
TraesCS7A01G533600.2	Wheat	cytosol	11.44	10.06
TraesCS1A01G265000.2	Wheat	cytosol	11.57	9.4

Protein Annotations

MapMan:18.4.23.2.2	Gene3D:3.40.20.10	Gene3D:3.90.190.10	InterPro:ADF-H/Gelsolin-like_dom_sf	InterPro:DUSP	InterPro:Dual-sp_phosphatase_cat-dom
GO:GO:0003674	GO:GO:0003824	GO:GO:0004725	GO:GO:0006464	GO:GO:0006470	GO:GO:0008138
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016311	GO:GO:0016787	GO:GO:0016791
GO:GO:0019538	InterPro:IPR000387	InterPro:IPR020422	InterPro:IPR029006	InterPro:IPR029021	PFAM:PF00782
ScanProsite:PS00383	PFscan:PS50054	PFscan:PS50056	PANTHER:PTHR10159	PANTHER:PTHR10159:SF491	InterPro:Prot-tyrosine_phosphatase-like
SMART:SM00195	SUPFAM:SSF52799	SUPFAM:SSF55753	InterPro:TYR_PHOSPHATASE_DUAL_dom	InterPro:TYR_PHOSPHATASE_dom	EnsemblPlantsGene:TraesCS1A01G045300
EnsemblPlants:TraesCS1A01G045300.2	InterPro:Tyr_Pase_AS	TIGR:cd00127	SEG:seg	:	:

Description

No Description!

Coordinates

chr1A:-:26959347..26962400

Molecular Weight (calculated)

81855.9 Da

IEP (calculated)

7.907

GRAVY (calculated)

-0.345

Length

752 amino acids

Sequence
(BLAST)

001: MANPDDGGGR KFWRSASWSA PRAAEAGPEA APLPPRMGPP PLTPRSKGRA CLPPLQPLAI TRRSLDEWPK AGSDDVGEWP NPTTPGASKA GGGGGGPGSA
101: KPGEGLRLDL STLRSQGRKD QIAFFDKECS KVAEHVYLGG DAVAKNRDIL RKNGITHVLN CVGFVCPEYF KSDLVYRTLW LQDSPTEDIT SILYDVFDYF
201: EDVREQAGRV FVHCCQGVSR STSLVIAYLM WREGQSFDDA FQFVKAARGI ANPNMGFACQ LLQCQKRVHA IPLSPNSVLR MYRLAPHSPY APLHLVPKML
301: NEPSPAALDS RGAFIVHVLS SIYVWVGIKC DTVMEKDARA AAFQVVRYEK VQGQIKVVRE GLEQPEFWDA FSSAPINSDS KMKLGKEQID SPSRTGVGSR
401: RVESYDSDFE LVQKAIAGGV VPAFSSSGTE DETHLPARES SWSLLRRKFI SRSLSRVYSD SALIRDLDPR VQHLTAEASI SPPFLSPSSL SSDSTISSKY
501: SSDSPSLSPS TSSPPSLGLS PASSNLPHAL VPSSRSPLRQ SSNAEHSKPI LGSIRSPSKV SSIAERRGGF SCLKLPSLPK ELVLPPRAPS IHKAEEATDK
601: SNTNGVKQLT GVSCPEKCTG TSSTATDSNS EATVHGETIL IEHTNSEACN YVQLLVYRWP CMEKLTAFAR KDLDPKTVFI FVAPNASRSA EAVKMVCVWV
701: GGEYECSKGV ESIDWQQVAG DFLNQKGFSN TLPVKVFKEH ETENLLEVLD AR

Best Arabidopsis Sequence Match ( AT3G06110.2 )
(BLAST)

001: MEKVVDLFGV GEANSQKLLE GGKDLSEIQQ GLFIGSVAEA NNKDFLKSSN ITHVLTVAVA LAPPYPDDFV YKVIEVVDRS ETDLTVYFDE CYSFIDQAIQ
101: SGGGVLVHCF MGMSRSVTIV VAYLMKKHGM GFSKAMELVR SRRHQAYPNP GFISQLQQFE KSIQGNA

Arabidopsis Description

DSPTP1BDual specificity protein phosphatase 1B [Source:UniProtKB/Swiss-Prot;Acc:Q9M8K7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.