Subcellular Localization
min:
: max
Winner_takes_all: unclear
Predictor Summary:
Predictor Summary:
- endoplasmic reticulum 4
- plasma membrane 4
- vacuole 5
- golgi 4
- extracellular 6
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
unclear:
25769308
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1A01G007700.1 | Wheat | golgi | 94.53 | 95.0 |
| TraesCS1B01G011300.1 | Wheat | golgi | 91.04 | 90.15 |
| TraesCS1D01G001400.1 | Wheat | nucleus | 35.82 | 35.47 |
| TraesCS1D01G001000.1 | Wheat | extracellular | 41.79 | 28.19 |
| TraesCS1D01G001100.1 | Wheat | nucleus, plastid | 40.3 | 27.46 |
| TraesCS1D01G001300.1 | Wheat | vacuole | 42.29 | 26.23 |
| TraesCS1D01G001200.1 | Wheat | extracellular | 42.29 | 25.99 |
Protein Annotations
| EnsemblPlants:TraesCS1D01G000700.1 | EnsemblPlantsGene:TraesCS1D01G000700 | Gene3D:1.10.110.10 | GO:GO:0003674 | GO:GO:0045735 | InterPro:Bifun_inhib/LTP/seed_sf |
| InterPro:Bifunc_inhib/LTP/seed_store | InterPro:Glia_glutenin | PANTHER:PTHR33454 | PFAM:PF13016 | PRINTS:PR00208 | SEG:seg |
| SignalP:SignalP-noTM | SMART:SM00499 | SUPFAM:SSF47699 | TIGR:cd00261 | MapMan:35.1 | : |
Description
No Description!
Coordinates
chr1D:-:209527..210267
Molecular Weight (calculated)
22372.7 Da
IEP (calculated)
6.696
GRAVY (calculated)
-0.382
Length
201 amino acids
Sequence
(BLAST)
(BLAST)
001: MKKFLVLALI VVAATTTAAE PFTAFRSAWE PQHPSSPEHQ PTPQPQEHPV PHQKLNPCRD ALLQQCSPVA DMSFLRSQVV QHSSCLVMWE QCCQQLKAIP
101: KQSRCEAIHN VVHAIILQQQ QQLVQATSTQ PQQQQQQGQQ QQQGLGSSQP QQQTQLDQGW IAVIGTWVIQ TIPAMCDVHV PPYCYTTISP SSDVTTDMGG
201: Y
101: KQSRCEAIHN VVHAIILQQQ QQLVQATSTQ PQQQQQQGQQ QQQGLGSSQP QQQTQLDQGW IAVIGTWVIQ TIPAMCDVHV PPYCYTTISP SSDVTTDMGG
201: Y
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.