Factsheet for TraesCS1B01G011300.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

endoplasmic reticulum 4
plasma membrane 4
vacuole 5
golgi 4
extracellular 6

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi
Any Predictor:	secretory
iPSORT:	secretory
MultiLoc:	vacuole
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	extracellular

golgi: 23128297

gfp, msms PMID: 23128297 doi

M Suliman, AL Chateigner-Boutin, M Francin-Allami, A Partier, B Bouchet, J Salse, C Pont, J Marion, H Rogniaux, D Tessier, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G000700.1	Wheat	unclear	90.15	91.04
TraesCS1A01G007700.1	Wheat	golgi	89.66	91.0
TraesCS1B01G010700.1	Wheat	cytosol	24.14	39.84
TraesCS6B01G066000.1	Wheat	vacuole	41.87	30.36
TraesCS6B01G065900.1	Wheat	plastid	19.21	30.23
TraesCS6B01G066100.1	Wheat	extracellular	32.51	29.2
TraesCS1B01G011000.1	Wheat	endoplasmic reticulum	40.89	28.52
TraesCS1B01G010900.1	Wheat	extracellular	40.39	28.18
TraesCS6B01G065800.1	Wheat	vacuole	43.35	27.85
TraesCS6B01G086500.1	Wheat	vacuole	42.36	27.39
TraesCS1B01G010600.1	Wheat	vacuole	40.89	26.18
TraesCS1B01G010500.1	Wheat	extracellular	37.44	25.59
TraesCS6B01G065600.1	Wheat	endoplasmic reticulum, extracellular	30.54	25.51
TraesCS1B01G010400.1	Wheat	golgi	35.96	24.17
TraesCS1B01G010800.1	Wheat	vacuole	38.92	23.1

Protein Annotations

EnsemblPlants:TraesCS1B01G011300.1	EnsemblPlantsGene:TraesCS1B01G011300	Gene3D:1.10.110.10	GO:GO:0003674	GO:GO:0045735	InterPro:Bifun_inhib/LTP/seed_sf
InterPro:Bifunc_inhib/LTP/seed_store	InterPro:Glia_glutenin	PFAM:PF13016	PRINTS:PR00208	SEG:seg	SignalP:SignalP-noTM
SMART:SM00499	SUPFAM:SSF47699	TIGR:cd00261	MapMan:35.1	:	:

Description

No Description!

Coordinates

chr1B:+:5175520..5176269

Molecular Weight (calculated)

22550.9 Da

IEP (calculated)

7.030

GRAVY (calculated)

-0.400

Length

203 amino acids

Sequence
(BLAST)

001: MKKFLVLALI VIAATTTAAE PFTAFRIASE PQHPSSPEQQ PTLQPQEHPV PHQKLNPCRD ALLHQCSPVA DMSFLRSQVV QHSSCLVMWE QCCQQLKAIP
101: KQSRCEAIHN VVHAIILQQQ KQLVQGTSTQ PQQQQQQGQQ EHGQGSSQPQ HQQQQQQLDQ GWIVAIGTWV IQTVPAMCDV HVPPYCYTTI SSSSDVTTGM
201: GGY

Best Arabidopsis Sequence Match ( AT4G35650.1 )
(BLAST)

001: MARRSVSIFN RLLANPPSPF TSLSRSITYM PRPGDGAPRT VTLIPGDGIG PLVTGAVEQV MEAMHAPVHF ERYEVLGNMR KVPEEVIESV KRNKVCLKGG
101: LATPVGGGVS SLNMQLRKEL DIFASLVNCI NVPGLVTRHE NVDIVVIREN TEGEYSGLEH EVVPGVVESL KVITKFCSER IARYAFEYAY LNNRKKVTAV
201: HKANIMKLAD GLFLESCREV AKHYSGITYN EIIVDNCCMQ LVAKPEQFDV MVTPNLYGNL IANTAAGIAG GTGVMPGGNV GAEHAIFEQG ASAGNVGNDK
301: MVEQKKANPV ALLLSSAMML RHLRFPTFAD RLETAVKQVI KEGKYRTKDL GGDCTTQEVV DAVIAALE

Arabidopsis Description

IDH3Isocitrate dehydrogenase [NAD] regulatory subunit 3, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:O81796]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.