Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- endoplasmic reticulum 4
- plasma membrane 4
- vacuole 5
- golgi 4
- extracellular 6
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1D01G001100.1 | Wheat | nucleus, plastid | 89.35 | 88.14 |
| TraesCS1B01G011000.1 | Wheat | endoplasmic reticulum | 86.6 | 86.6 |
| TraesCS1B01G010700.1 | Wheat | cytosol | 34.36 | 81.3 |
| TraesCS1B01G010500.1 | Wheat | extracellular | 73.54 | 72.05 |
| TraesCS1B01G010800.1 | Wheat | vacuole | 83.85 | 71.34 |
| TraesCS1B01G010400.1 | Wheat | golgi | 71.13 | 68.54 |
| HORVU1Hr1G000680.1 | Barley | vacuole | 43.64 | 58.8 |
| HORVU1Hr1G000700.1 | Barley | extracellular, vacuole | 60.14 | 51.02 |
| TraesCS6B01G066100.1 | Wheat | extracellular | 36.43 | 46.9 |
| TraesCS6B01G066000.1 | Wheat | vacuole | 44.33 | 46.07 |
| TraesCS1B01G011300.1 | Wheat | golgi | 28.18 | 40.39 |
| TraesCS6B01G086500.1 | Wheat | vacuole | 43.3 | 40.13 |
| TraesCS6B01G065600.1 | Wheat | endoplasmic reticulum, extracellular | 33.33 | 39.92 |
| TraesCS6B01G065800.1 | Wheat | vacuole | 43.3 | 39.87 |
| TraesCS1B01G010600.1 | Wheat | vacuole | 42.96 | 39.43 |
| TraesCS6B01G065900.1 | Wheat | plastid | 14.43 | 32.56 |
Protein Annotations
| EnsemblPlants:TraesCS1B01G010900.1 | EnsemblPlantsGene:TraesCS1B01G010900 | Gene3D:1.10.110.10 | GO:GO:0003674 | GO:GO:0045735 | InterPro:Bifun_inhib/LTP/seed_sf |
| InterPro:Bifunc_inhib/LTP/seed_store | InterPro:Glia_glutenin | PFAM:PF13016 | PRINTS:PR00208 | PRINTS:PR00209 | SEG:seg |
| SignalP:SignalP-noTM | SMART:SM00499 | SUPFAM:SSF47699 | TIGR:cd00261 | MapMan:35.1 | : |
Description
No Description!
Coordinates
chr1B:+:5137077..5138111
Molecular Weight (calculated)
33077.0 Da
IEP (calculated)
8.585
GRAVY (calculated)
-0.612
Length
291 amino acids
Sequence
(BLAST)
(BLAST)
001: MKTLLILTIL VMAVTIGTAN MQVDPSGQVQ WPQQQPVLLP QQPFSQQPQQ TFPQPQQTFP HQPQQQFPQP QQPQQQFLQP QQPFPQQPQQ PYPQQPQQPF
101: PQTQQPQQLF PQSQQPQQPY PQPQQPQQSF PQQQPSFIQP SLQQQLNPCK NLLLQQCRPV SLVSSLWSMI WPQSACQVMR QQCCQQLAQI PQQLQCAAIH
201: SVVHSIKQQQ QQQQQQQGMR ILLPLYQQQQ VGQGTLVQGQ GIIQPQQPAQ LEAIRSLVLQ TLPTMCNVYV PPECSIIKAP FASIVTGIGG Q
101: PQTQQPQQLF PQSQQPQQPY PQPQQPQQSF PQQQPSFIQP SLQQQLNPCK NLLLQQCRPV SLVSSLWSMI WPQSACQVMR QQCCQQLAQI PQQLQCAAIH
201: SVVHSIKQQQ QQQQQQQGMR ILLPLYQQQQ VGQGTLVQGQ GIIQPQQPAQ LEAIRSLVLQ TLPTMCNVYV PPECSIIKAP FASIVTGIGG Q
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.